PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM89372.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

RAV

Protein Properties

Length: 362aa MW: 39620.4 Da PI: 9.3413

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM89372.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38.6	2.7e-12	48	96	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f + eAa+a++ a ++++g OWM89372.1 48 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEHEAARAYDVAVQRFRG 96 78**9888.8*****3.....5******99**********998 PP
2	B3	98.3	4.8e-31	175	271	1	93
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+kv tpsdv+k++rlv+pk++ae+h ++ ++ l +ed+ gr+W+++++y+++s++yvltkGW++Fvk++gLk+g++v F+++ +++l+ OWM89372.1 175 FEKVATPSDVGKLNRLVIPKQHAERHfpanSSTASKGLLLNFEDRAGRVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLKAGEVVCFQRSTGPDKQLY 271 89************************98666668899**********************************************7755666555 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MDGICIEDST TTDSTTSPLN PSLKSPPESV VLDSDSGPEI ESRKLPSSRY KGVVPQPNGR 60 WGAQIYEKHQ RVWLGTFNEE HEAARAYDVA VQRFRGRDAV TNFKPLSETE DSELESAFLS 120 SHSKDEIVDM LRKHTYKDEL EQSKRNFCSA GGEGTCQGAK GLGPSHVGKA REVLFEKVAT 180 PSDVGKLNRL VIPKQHAERH FPANSSTASK GLLLNFEDRA GRVWRFRYSY WNSSQSYVLT 240 KGWSRFVKEK GLKAGEVVCF QRSTGPDKQL YIESRPRCNT PAGPTSSSPA GQPVQMVRIF 300 GVNIFKLQGN GGGNPVDSNG GSRSSSVSVS GAAGCSKGNK RIREVDLLSM ECSKKQTVIG 360 AL

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MDGICIEDST TTDSTTSPLN PSLKSPPESV VLDSDSGPEI ESRKLPSSRY KGVVPQPNGR  60
WGAQIYEKHQ RVWLGTFNEE HEAARAYDVA VQRFRGRDAV TNFKPLSETE DSELESAFLS  120
SHSKDEIVDM LRKHTYKDEL EQSKRNFCSA GGEGTCQGAK GLGPSHVGKA REVLFEKVAT  180
PSDVGKLNRL VIPKQHAERH FPANSSTASK GLLLNFEDRA GRVWRFRYSY WNSSQSYVLT  240
KGWSRFVKEK GLKAGEVVCF QRSTGPDKQL YIESRPRCNT PAGPTSSSPA GQPVQMVRIF  300
GVNIFKLQGN GGGNPVDSNG GSRSSSVSVS GAAGCSKGNK RIREVDLLSM ECSKKQTVIG  360
AL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-139	RAV family protein