PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OWM89370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 252aa MW: 28166.7 Da PI: 8.4959 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.4e-05 | 70 | 89 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ OWM89370.1 70 FSCPVCAKTFNRYNNMQMHM 89 89*****************9 PP | |||||||
2 | zf-C2H2 | 11.7 | 0.00083 | 155 | 177 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C k+F + + ++H +++ OWM89370.1 155 FSCRKCAKPFAVRGDWRTHEKNC 177 89*****************9987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 252 aa Download sequence |
MNHQDNFCGV SGEENMVTVA LHIGPPRSCG EGGGDGSSII ASHHNNNGLV DQGQYWIPSP 60 AQILVGPAQF SCPVCAKTFN RYNNMQMHMW GHGSQYRKGP DSLKGTKPAS SMLRLPCYCC 120 AEGCKNNIDH PRSRPLKDFR TLQTHYKRKH GSKPFSCRKC AKPFAVRGDW RTHEKNCGKL 180 WFCICGSDFK HKRSLKDHVR AFGDGHAPHT VESLCEVGEK DCVNNNNNSS YIGDEEFDLG 240 HEVRHGPSSR FY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13290.1 | 1e-114 | C2H2 family protein |