PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OWM88633.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 216aa MW: 24774.4 Da PI: 7.5026 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.9e-18 | 25 | 76 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t++q++ Le+ F ++++++ e++ +LA +lg++ rqV +W+qN+Ra++k OWM88633.1 25 KRLTEDQVRLLEKSFSSTKKLDPERKLQLAGELGVPPRQVAIWYQNKRARWK 76 5689***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 110.5 | 1.1e-35 | 23 | 114 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 k +rl+++qv+lLE+sF++++kL+perK +la eLg+ prqva+W+qn+RAR+kt+ lE dy+aL+ ++++ +e++ Le++ve+L++el++ OWM88633.1 23 KGKRLTEDQVRLLEKSFSSTKKLDPERKLQLAGELGVPPRQVAIWYQNKRARWKTQTLEIDYNALQVKLESALSEKRGLERDVERLQAELRK 114 779*************************************************************************************9986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence |
MDFYETQKQR TAVHRQSSSS RHKGKRLTED QVRLLEKSFS STKKLDPERK LQLAGELGVP 60 PRQVAIWYQN KRARWKTQTL EIDYNALQVK LESALSEKRG LERDVERLQA ELRKARDMLA 120 LTGLNQQVQE PNNNYDINTT NTTNNVISCS NNASGSCEEG GGSSSNNSFI INGDQRQHHR 180 HVSCCWEEEE ENNKNLHLDD LYACVMFANG PTRSDY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G53980.1 | 3e-36 | HD-ZIP family protein |