PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM88618.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

TCP

Protein Properties

Length: 644aa MW: 70761.9 Da PI: 7.0897

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM88618.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.5	2.8e-35	250	362	2	114
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskks 100 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai+el+++++ ++++++a+ s+ +++ +++++++++++ + OWM88618.1 250 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKVAIDELAELPAWKPTAVTAAGAAGSSRAQEPPQQSEEQENQSIK 348 79**************************************************************66666555222222222222233344444444444 PP TCP 101 qksaasalnlakes 114 +++ + ++nl + s OWM88618.1 349 RHQGQDQSNLRHGS 362 44444445555533 PP

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence
MAFGRKEREE EEEIRGRGGI FSIIISRAVN RPSELPLLPF VVVLLILGKL EPEDGEEEEE 60 QQLQKQKKKK QQQQQQKKSL SLDPHRNPHH PHHHHHHPHL HYFQQLQNSV PNVDEAEEED 120 PDPDIQGQSQ DHAHHHHHPH PFLLNPTPSS HNHPHQQHSH FFYGGARLEE DPLPQNQNPH 180 SQPPKKRSYI PQSSAITTTD YAQKMEEAHG HHQAAVAVAA TAPSRLGVVR GNGGGGEIVE 240 VQGGHIVRST GRKDRHSKVC TAKGPRDRRV RLSAHTAIQF YDVQDRLGYD RPSKAVDWLI 300 KKAKVAIDEL AELPAWKPTA VTAAGAAGSS RAQEPPQQSE EQENQSIKRH QGQDQSNLRH 360 GSVDAAKMLS GGSGASGAIA SISAPNHQQI NENRGFLPPS LDTDSIADTI KSFFPMGAAA 420 ETAQQQHPRQ QAPHSVQFQG YSHPPDLLSR TSSHQSQDLR LSLHSFQDPM LLHHHHQQNQ 480 SHEPPPPVAA VAFSGTAQLG FDASPSSSLW SDVARFQRLP AWNTAAATDT GGSSSGGAFI 540 FGSQPILQPL FGQSQGQSQY FSQRGPLQSS STPPVRAWID PTITPDHQIP HQSIHNPPSV 600 SGLGFGAAGF LGYHIPARIR GQEEDHDDGT ILNKPSSASS DSRH

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence

MAFGRKEREE EEEIRGRGGI FSIIISRAVN RPSELPLLPF VVVLLILGKL EPEDGEEEEE  60
QQLQKQKKKK QQQQQQKKSL SLDPHRNPHH PHHHHHHPHL HYFQQLQNSV PNVDEAEEED  120
PDPDIQGQSQ DHAHHHHHPH PFLLNPTPSS HNHPHQQHSH FFYGGARLEE DPLPQNQNPH  180
SQPPKKRSYI PQSSAITTTD YAQKMEEAHG HHQAAVAVAA TAPSRLGVVR GNGGGGEIVE  240
VQGGHIVRST GRKDRHSKVC TAKGPRDRRV RLSAHTAIQF YDVQDRLGYD RPSKAVDWLI  300
KKAKVAIDEL AELPAWKPTA VTAAGAAGSS RAQEPPQQSE EQENQSIKRH QGQDQSNLRH  360
GSVDAAKMLS GGSGASGAIA SISAPNHQQI NENRGFLPPS LDTDSIADTI KSFFPMGAAA  420
ETAQQQHPRQ QAPHSVQFQG YSHPPDLLSR TSSHQSQDLR LSLHSFQDPM LLHHHHQQNQ  480
SHEPPPPVAA VAFSGTAQLG FDASPSSSLW SDVARFQRLP AWNTAAATDT GGSSSGGAFI  540
FGSQPILQPL FGQSQGQSQY FSQRGPLQSS STPPVRAWID PTITPDHQIP HQSIHNPPSV  600
SGLGFGAAGF LGYHIPARIR GQEEDHDDGT ILNKPSSASS DSRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	8e-39	TCP family protein