PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OWM88526.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 203aa MW: 22134 Da PI: 6.7667 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 146.4 | 8e-46 | 44 | 143 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C++dC++apyfpa+qp+kfa vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i+ lqqq+++l++elal+++ OWM88526.1 44 PCAACKLLRRRCTPDCIFAPYFPAHQPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISCLQQQIDHLQKELALAQA 142 7**********************************************************************************************9997 PP DUF260 100 e 100 e OWM88526.1 143 E 143 6 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence |
MYMDEEDMMM MRKVLRSDRG SAGGSQGQLT ASSAAAAGAV GPSPCAACKL LRRRCTPDCI 60 FAPYFPAHQP HKFASVHKVF GASNVNKMLQ ELPEHQRSDA VSSMVYEANA RVRDPVYGCV 120 GAISCLQQQI DHLQKELALA QAEVVQLRLR QFGSDANAAT NSPETASPSP TYVLSSSHQS 180 RSFFSMDLVD EASMRPEESL WSC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G31320.1 | 1e-55 | LBD family protein |