PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM88448.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 398aa MW: 43932.8 Da PI: 9.2586

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM88448.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	159	181	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp Cg+ F+ +++++ H+++ H OWM88448.1 159 ACPECGEIFTKPETMELHLSVtH 181 6******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MAKERSSRKP KQAPEKENKD HHQQQQQLLH NKQQKWTLVR TLLGCNHQPI EEATGKCKKM 60 KPTATPEVHR RRPSSSSLSS SSRSLRAPHP LNEPNSLSSS NSFSAYSSRS SSSINGGSGS 120 SRGMTGLRRL SGCYECRMVV DPIPIGVSRE PSPTSTICAC PECGEIFTKP ETMELHLSVT 180 HAVSELGPED TSKNIVEIIF QSSWLKKQGP APIIDRVLKV HNTPKTISKF EDYRDSIKSK 240 STKKNPRCSA DGNELLRFHS TMLSCSLGLN GSTSLCNSSP LCTVCEIIRN GFKLQNRECG 300 SKNGILTTAT SGRAHDRAEE TLNTEEKKKL RAMMVCRVIA GRVKRNNNVI EGQEIEDQYD 360 SVGGGSDNTV GLFSSLDELF VFNPRAILPC FVVIYHSL

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MAKERSSRKP KQAPEKENKD HHQQQQQLLH NKQQKWTLVR TLLGCNHQPI EEATGKCKKM  60
KPTATPEVHR RRPSSSSLSS SSRSLRAPHP LNEPNSLSSS NSFSAYSSRS SSSINGGSGS  120
SRGMTGLRRL SGCYECRMVV DPIPIGVSRE PSPTSTICAC PECGEIFTKP ETMELHLSVT  180
HAVSELGPED TSKNIVEIIF QSSWLKKQGP APIIDRVLKV HNTPKTISKF EDYRDSIKSK  240
STKKNPRCSA DGNELLRFHS TMLSCSLGLN GSTSLCNSSP LCTVCEIIRN GFKLQNRECG  300
SKNGILTTAT SGRAHDRAEE TLNTEEKKKL RAMMVCRVIA GRVKRNNNVI EGQEIEDQYD  360
SVGGGSDNTV GLFSSLDELF VFNPRAILPC FVVIYHSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-86	C2H2 family protein