PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OWM88402.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 334aa MW: 38391.3 Da PI: 10.3424 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.9e-05 | 136 | 159 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C Cg+ F +++ L++H r H OWM88402.1 136 YLCRVCGRKFYTNEKLVNHFRQiH 159 56*****************99877 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 334 aa Download sequence |
MLLKARKILS FPRHGNCFNL NSRIGIADFT RPCYYTRGSC YSSSEPRSAS TQKPNRANVA 60 VFWDLDNKPP NSFPPFEAAT KLKAASSSFG YVRHMVAYAN SHSFSYVPPV VREQRKERKL 120 LDKLENKGVI KPSEPYLCRV CGRKFYTNEK LVNHFRQIHE SEHKKRLSQI ESARGKRRVN 180 LVAKYAMKME KYKNAARDIL TPRVGCGLAD ELKRAGFWVQ TVSDRPEAAD IALRNHMIDM 240 MDRRRADCLV LVSDDSDFVG VIKEARERCL KTVVVGDISD GALKRTADVG FSWKEILMGK 300 AKKEAVSVMG RWKDREILKR LEWTYDPEAE RKKY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G12240.1 | 1e-147 | C2H2 family protein |