PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM88275.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

bHLH

Protein Properties

Length: 330aa MW: 35720.4 Da PI: 8.4869

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM88275.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.3	6.3e-14	115	166	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ L++l+P++ + ++ + a+i+ A+e++k+L+ OWM88275.1 115 QRMTHIAVERNRRKQMNEHLAVLKSLMPES---YVQRGDQASIVGGAIEFVKELE 166 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MALDALSSNE LLNFIIYDTI SATPYSSLES SDATTTIIPD APPPSILIET NQPGLDPLGS 60 GGAAGACTSP SNMSMHCLAG DPKPNGRKAG LGAQGRKKRR RRTRVCKNKE EAETQRMTHI 120 AVERNRRKQM NEHLAVLKSL MPESYVQRGD QASIVGGAIE FVKELEHLLQ SLEAQKLQQK 180 LMEDETQSQT SPAAAEDTKI LRPPFSQFFA YPQYTWSQLP NNHHSCKYSA TSCSSSSSRS 240 GSMDGNGNGN GHGHGSGIGG GMTAAVADIE VTLIETHANL RILSRSRPRQ LSRLVAGFHA 300 LHLSILHLNV TTLHPLVLYS ISAKLSILEN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	102	RKKRRRR
2	97	102	KKRRRR
3	116	127	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	2e-49	bHLH family protein