PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM88273.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | C3H | ||||||||
Protein Properties | Length: 354aa MW: 37830.6 Da PI: 7.064 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.3 | 4.8e-07 | 85 | 109 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f+ GtC+y +C+FaH+ OWM88273.1 85 FKTKLCCKFRS-GTCPYITNCNFAHS 109 69*******99.*************8 PP | |||||||
2 | zf-CCCH | 18.6 | 3.3e-06 | 153 | 178 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ OWM88273.1 153 YKGRHCKKFYTEEGCPYGDNCTFLHD 178 78888********************7 PP | |||||||
3 | zf-CCCH | 42.3 | 1.3e-13 | 232 | 257 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg OWM88273.1 232 WKTRICNKWELTGYCPFGSKCHFAHG 257 8************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence |
MDYGPESGNV VHVIPEPWAS EEEYRIWNGT DTPSDTPSNS NHDQRQSQSQ TRSGSEPPSK 60 KSKGTTLDSA SSGNSRSKAI GKMFFKTKLC CKFRSGTCPY ITNCNFAHSI EELRRPPPNW 120 QEIVAAADDE EREEFQIPSV GSVGFNGDSQ RSYKGRHCKK FYTEEGCPYG DNCTFLHDEQ 180 SKNRESVAIS LGPGGYSGGG GGGGGGGGGG GGGGGGAGGG GGAVSNVKPS NWKTRICNKW 240 ELTGYCPFGS KCHFAHGAAE LHRYGGGLLE LESRDASSVP PDAKQGGGGV PMKALTDNEV 300 TAVNSVPHLD VYHMGVPSQR TAIILQRPGQ RAHQKWKGPD KISRIYGDWI DDIE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-114 | C3H family protein |