PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM87617.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 307aa MW: 34326.5 Da PI: 7.4156

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM87617.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00043	125	147	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k F++ L H +H OWM87617.1 125 YQCKTCNKAFPSFQALGGHRASH 147 9***********99999998887 PP
2	zf-C2H2	14.4	0.00011	209	231	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H OWM87617.1 209 HQCSICGAEFSSGQALGGHMRRH 231 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MMVARPNGRI PLPKRKRTRR QRGQSPFTFQ IASSPSEEKV SKADRFSPSY SSDVTRGDET 60 NEEEDMAHCL ILLARGQLGD HEKRRSLVEE SLVEEDDEDE QEANHDHHHD KFSSKRFLAT 120 EEYVYQCKTC NKAFPSFQAL GGHRASHKKA RITPPSMIEH NKQPSPTSSM PSPISALEDD 180 DVLSLQWVNT KNSHPNTGIN IAKQLPKIHQ CSICGAEFSS GQALGGHMRR HRTVISRPAP 240 ALALIPRIPE SEEPLRLRSK APSLQLDLNL PAPEDDDPEV GFPINSRGQQ RGSSLVFSFP 300 ALVGCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-43	C2H2 family protein