PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM87416.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 614aa MW: 67462 Da PI: 7.857

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM87416.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.9	3.6e-08	253	273	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C+ Gd C +aHg OWM87416.1 253 PCPDFRK-GSCPKGDACEYAHG 273 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence
MCSGSKSKLC PSDFSMEGGS LNDRIPCRCS VLLELAASND LAAFKREVED EGCDVDEPCF 60 WYGRKIGSRK MGFEERTPLM IASMFGSLDV LKYILGTGKA DVNRACGSDK ATALRCAVVG 120 GSHGSIEAVK LLLDSSADPY SVDSNGNKPV DLVGLVLTPS RRKALKLLFK GEGFAGEDKP 180 MIATPEKKEY PVDVPLPDIN NGIYSSDEFR MYTFKVKPCS RAYSHDWTEC PFVHPGENAR 240 RRDPRKYPYS CVPCPDFRKG SCPKGDACEY AHGVFESWLH PAQYKTRLCK DETGCARKVC 300 FFAHKPEELR PVYASTGSAL PSPKSFSPPL SPRASPKSMG LWHTPPALQL SGSRLKTGLS 360 SRDLDLEMDL LSLENNQFLE EISRLSSPSY SNKDFSRIGD LKPTNFEDSL RSLDPTVLSQ 420 LQGLPMTNNS AHSAAHMQSP VGVQMRQNMS QFRQSNFPSS PVRKTSPFGF DSSSAVATAV 480 MNSRSAAMTK RSQSFIDRGA STQGPFGNAN SMAQSNLSGW GSPDGKLDWG VRGDELNKLR 540 KSYSFGIRDT NNSINRADFS DEPDVSWVNS LVRDVPQGER GMEKQRSSNG TGNHVMALPW 600 GVDQLYIEQE QTVA

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence

MCSGSKSKLC PSDFSMEGGS LNDRIPCRCS VLLELAASND LAAFKREVED EGCDVDEPCF  60
WYGRKIGSRK MGFEERTPLM IASMFGSLDV LKYILGTGKA DVNRACGSDK ATALRCAVVG  120
GSHGSIEAVK LLLDSSADPY SVDSNGNKPV DLVGLVLTPS RRKALKLLFK GEGFAGEDKP  180
MIATPEKKEY PVDVPLPDIN NGIYSSDEFR MYTFKVKPCS RAYSHDWTEC PFVHPGENAR  240
RRDPRKYPYS CVPCPDFRKG SCPKGDACEY AHGVFESWLH PAQYKTRLCK DETGCARKVC  300
FFAHKPEELR PVYASTGSAL PSPKSFSPPL SPRASPKSMG LWHTPPALQL SGSRLKTGLS  360
SRDLDLEMDL LSLENNQFLE EISRLSSPSY SNKDFSRIGD LKPTNFEDSL RSLDPTVLSQ  420
LQGLPMTNNS AHSAAHMQSP VGVQMRQNMS QFRQSNFPSS PVRKTSPFGF DSSSAVATAV  480
MNSRSAAMTK RSQSFIDRGA STQGPFGNAN SMAQSNLSGW GSPDGKLDWG VRGDELNKLR  540
KSYSFGIRDT NNSINRADFS DEPDVSWVNS LVRDVPQGER GMEKQRSSNG TGNHVMALPW  600
GVDQLYIEQE QTVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein