PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM85955.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family GRAS
Protein Properties Length: 423aa    MW: 47355.4 Da    PI: 7.6213
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM85955.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS419.62.7e-128554232374
        GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                 ++lLl+cA+++s+++++ a+++L+ ls    sp+gd+ +Rla +f +AL+ rl r  +++ ++a +   + +++  e  + +  +++v+P+++fshlta
  OWM85955.1  55 RQLLLTCAQFISQSNFSSAHHVLSVLSAKyYSPYGDSSERLAYHFSRALSLRLGRhLGPSPASAAA---ACSRDPRELQSCYLSLNQVTPFVRFSHLTA 150
                 799************************999*************************33333333332...222235666677777*************** PP

        GRAS  99 NqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                 NqaIl+a++g   + vHi+Dfdi++G+QWp+L+qaLasR ++pps+RiTg g+    + e+l++tg+rL+ fA++lg+pf+f++l+ ++ +d+ + +++
  OWM85955.1 151 NQAILDAINGGgqQSVHIVDFDIMHGVQWPPLMQALASR-APPPSIRITGAGP----DPESLNRTGDRLSMFAHSLGLPFHFHALHLTDDNDMGPLMIA 244
                 ********987669************************9.899**********....9***************************************** PP

        GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                 v+p+E +aVnlv  lhrl +++ + ++  +++L+++++l+P++v+v+e+ea+hn++sFl+rf+eal++ysa+fdslea+lp++s+er  vE +++grei
  OWM85955.1 245 VHPDEIVAVNLVNYLHRLIRSDREARE-LRTFLHQIRGLNPRIVTVAEREASHNHPSFLRRFMEALDHYSAVFDSLEATLPPNSRERLAVETVWFGREI 342
                 *******************88888888.99********************************************************************* PP

        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++va+eg+ rrerhe++e+W+  l+ +GF++vpls +a +qaklllr ++ s+gy+++  ++s++lgW++rpL+svS+Wr
  OWM85955.1 343 ADIVAAEGEGRRERHERFESWEILLRGSGFRNVPLSPFALSQAKLLLRLHYpSEGYQLQITNNSVFLGWQNRPLFSVSSWR 423
                 ********************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    
MLGSFSNNSA SRGREGRDEE TAGPSSSPSS ALDLGRPYHQ YDLYSQPPSP VLHTRQLLLT  60
CAQFISQSNF SSAHHVLSVL SAKYYSPYGD SSERLAYHFS RALSLRLGRH LGPSPASAAA  120
ACSRDPRELQ SCYLSLNQVT PFVRFSHLTA NQAILDAING GGQQSVHIVD FDIMHGVQWP  180
PLMQALASRA PPPSIRITGA GPDPESLNRT GDRLSMFAHS LGLPFHFHAL HLTDDNDMGP  240
LMIAVHPDEI VAVNLVNYLH RLIRSDREAR ELRTFLHQIR GLNPRIVTVA EREASHNHPS  300
FLRRFMEALD HYSAVFDSLE ATLPPNSRER LAVETVWFGR EIADIVAAEG EGRRERHERF  360
ESWEILLRGS GFRNVPLSPF ALSQAKLLLR LHYPSEGYQL QITNNSVFLG WQNRPLFSVS  420
SWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-126GRAS family protein