PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM85694.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 282aa MW: 32275.2 Da PI: 5.0029

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM85694.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.3	2e-14	20	67	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+ +++++G +W+ ++ g+ R++k+c++rw +yl OWM85694.1 20 KGPWSAEEDQKLITYIRRYGIWNWTQMPKFAGLARSGKSCRLRWMNYL 67 79****************99**********************97 PP
2	Myb_DNA-binding	46	1.2e-14	74	116	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T++E+e + + ++lG++ W++Ia +++ gRt++++k++w++ OWM85694.1 74 GNFTKQEEETISKWQQLLGNR-WSAIAGKLP-GRTDNEIKNYWNT 116 89*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence
MVRTPFSKQN EDKKKGEIKK GPWSAEEDQK LITYIRRYGI WNWTQMPKFA GLARSGKSCR 60 LRWMNYLRPN IKHGNFTKQE EETISKWQQL LGNRWSAIAG KLPGRTDNEI KNYWNTRLKK 120 CVRPEKSTQG PAPLTDNRTS SQLAAPLPTA IESVKSDYPI IFESLSEETS MSSSGSRTST 180 WKAFELQETS INSLAINDWV NKEASWDAEI AGKSTLLEVA NKELDLDYWE EMILPPQEEA 240 SLEEDFDSMF MVSSGLLPPA ADCSYPEFST DGHLVYDNLW EN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06180.1	4e-49	MYB family protein