PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM85693.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 279aa MW: 31852.9 Da PI: 6.3064

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM85693.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.2	5e-15	20	67	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+ +++++G +W++ ++ g+ R++k+c++rw +yl OWM85693.1 20 KGPWSAEEDQKLIAYIRRYGIWNWTLMPKFAGLARSGKSCRLRWMNYL 67 79****************99**********************97 PP
2	Myb_DNA-binding	49.8	7.6e-16	74	116	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T++E+e +++ ++lG++ W++Ia +++ gRt++++k++w++ OWM85693.1 74 GNFTKQEEETIIKWQQLLGNR-WSSIATKLP-GRTDNEIKNYWNT 116 89*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MVRPPSSKQN EDKKSGEINK GPWSAEEDQK LIAYIRRYGI WNWTLMPKFA GLARSGKSCR 60 LRWMNYLRPN IRHGNFTKQE EETIIKWQQL LGNRWSSIAT KLPGRTDNEI KNYWNTRLKK 120 SVRSEKSTQA PHTNNRTSSQ LAAPLPPATV SVKSDHPKIF ESLSEETLTM SSSGSSTWKA 180 FELQETSANS LPINDWVNNE ASWSVQIAGK STLLEAVSKG LELDYWEEMI LPPLEDVSLA 240 EDFDAMFWVS PGLVLPAADC SLPKFSTDEY LVYDNLWEY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06180.1	5e-48	MYB family protein