PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM85201.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

ARF

Protein Properties

Length: 677aa MW: 75867.8 Da PI: 6.6807

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM85201.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.3	3.4e-24	114	214	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+kvlt sd++++g +++ +k+a+e+ + + +++l +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD++vF + +++el OWM85201.1 114 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQELAAKDLHGYEWKFKHIYRGQPRRHLLTTGWSTFVTSKRLIAGDSFVFL--RGENGEL 208 99**************************9543..445569*********************************************..449999 PP EEEEE- CS B3 93 vvkvfr 98 +v+v+r OWM85201.1 209 RVGVRR 214 ****98 PP
2	Auxin_resp	103	3.6e-34	240	319	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+h+++t++ F v+Y+Pr+ s+F+++++k+ +a+k++++vGmRfkm+fe+eds+err+sGt++gv+dl+p +W +S+WrsLk OWM85201.1 240 ASHSVKTQTLFVVYYKPRT--SQFIISLNKYIEAIKNSFTVGMRFKMRFEGEDSPERRFSGTIIGVEDLSP-HWVDSRWRSLK 319 6899************6..9*********************************************.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence
MLGPAEDDLY AELWKACAGP LVDVPRQGER VYYFPQGHME QLEASTNQEL NQSLPLFGLP 60 SKILCHVMHV QLLAEQETDE VYAQITLIPD SEQVEPTSPD ECLPETPRPK IHSFCKVLTA 120 SDTSTHGGFS VLRKHATECL PPLDMTQATP TQELAAKDLH GYEWKFKHIY RGQPRRHLLT 180 TGWSTFVTSK RLIAGDSFVF LRGENGELRV GVRRLARQQG SMPSSVISSQ SMHLGVLATA 240 SHSVKTQTLF VVYYKPRTSQ FIISLNKYIE AIKNSFTVGM RFKMRFEGED SPERRFSGTI 300 IGVEDLSPHW VDSRWRSLKV QWDEHASIPR PDRVSPWEIE HFVPSVPASL TQPTESKNKR 360 PRPPSEVPPL DTTTTPALWN SGLRHSSDEE KRTENYFMWN HKQQMDINVN SNSPVTRVQT 420 EGPWLSSPRF SVSQRLSQDM SEDSKSATAR SVISGYPATQ PSKLHNGQLP SPVEEGKKVV 480 ERTTSCRLFG IELISHSTSL PLVEKPPVQL SVSSGTTEGH VHSISSAAES DPKSDFPKGS 540 KENKKVQLPI LGKDPQAKQT SASMRSRTKV QMQGIAVGRA VDLTTLEGYN QLIDELEEMF 600 EIKGQLRPRN KWEIVFTDDE GDMMLLGDDP WLEFCNMVRR IFICSSQDVK KMGSGTKLPV 660 SPVEGEGTMI SSDTAEN

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence

MLGPAEDDLY AELWKACAGP LVDVPRQGER VYYFPQGHME QLEASTNQEL NQSLPLFGLP  60
SKILCHVMHV QLLAEQETDE VYAQITLIPD SEQVEPTSPD ECLPETPRPK IHSFCKVLTA  120
SDTSTHGGFS VLRKHATECL PPLDMTQATP TQELAAKDLH GYEWKFKHIY RGQPRRHLLT  180
TGWSTFVTSK RLIAGDSFVF LRGENGELRV GVRRLARQQG SMPSSVISSQ SMHLGVLATA  240
SHSVKTQTLF VVYYKPRTSQ FIISLNKYIE AIKNSFTVGM RFKMRFEGED SPERRFSGTI  300
IGVEDLSPHW VDSRWRSLKV QWDEHASIPR PDRVSPWEIE HFVPSVPASL TQPTESKNKR  360
PRPPSEVPPL DTTTTPALWN SGLRHSSDEE KRTENYFMWN HKQQMDINVN SNSPVTRVQT  420
EGPWLSSPRF SVSQRLSQDM SEDSKSATAR SVISGYPATQ PSKLHNGQLP SPVEEGKKVV  480
ERTTSCRLFG IELISHSTSL PLVEKPPVQL SVSSGTTEGH VHSISSAAES DPKSDFPKGS  540
KENKKVQLPI LGKDPQAKQT SASMRSRTKV QMQGIAVGRA VDLTTLEGYN QLIDELEEMF  600
EIKGQLRPRN KWEIVFTDDE GDMMLLGDDP WLEFCNMVRR IFICSSQDVK KMGSGTKLPV  660
SPVEGEGTMI SSDTAEN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	359	363	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.1	0.0	ARF family protein