PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM85002.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 244aa MW: 27192.4 Da PI: 8.5871

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM85002.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.2e-16	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+++++ +G g+W++ ++ g++R++k+c++rw +yl OWM85002.1 13 KGAWSKQEDQKLIEYIRVHGEGSWRSLPKAAGLHRCGKSCRLRWINYL 60 79********************************************97 PP
2	Myb_DNA-binding	51.2	2.9e-16	66	110	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ OWM85002.1 66 RGNFAQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110 89999***************.*****.*********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MRKPCCDKEG NNKGAWSKQE DQKLIEYIRV HGEGSWRSLP KAAGLHRCGK SCRLRWINYL 60 RPDIKRGNFA QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IKKKLIGMGI 120 DPNNHKLSQT TPPQPQSNSN GFRAATSSGS SMDVDACNVH QPHKSSGDNH VTNSGQRPSD 180 EASCLEDETS SQSHERHNLN LDLTISFPSP RVTFFKETGA GTELSASCRE IDCGGSPTTL 240 LLFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	2e-74	MYB family protein