PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM84991.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 372aa MW: 42161 Da PI: 8.388

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM84991.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.6	2.5e-17	140	187	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++v ++G g W++++ + g++R++k+c++rw++yl OWM84991.1 140 KGAWTEEEDDLLRKCVDKYGQGEWRRVPLRAGLNRCRKSCRLRWLNYL 187 79********************************************97 PP
2	Myb_DNA-binding	45.6	1.6e-14	193	238	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T++E + +v+++k+lG++ W++Ia + gRt++++k++w++++ OWM84991.1 193 RGEFTEDEIDMIVRLHKLLGNR-WTLIAGILS-GRTANDVKNYWNTHM 238 899*****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MFLLQSLVCL DYLWQLRNSL RISKDSLNLQ HVTAEICRRS KAYEEAWLHK SASLKAPQQK 60 LPSQLLVFSF DVALRHNASY LAIACSDGRG NLIYAWSFQT QQTDPTIGEA EAALKAIRGP 120 VNEELSAAME EAASFRRVRK GAWTEEEDDL LRKCVDKYGQ GEWRRVPLRA GLNRCRKSCR 180 LRWLNYLSPN IKRGEFTEDE IDMIVRLHKL LGNRWTLIAG ILSGRTANDV KNYWNTHMVR 240 KKTVPNEEIH QRKTKTKTNI IIKPRPRTLS KDFGKAKPAG NTAAAASNNT IPQDHLDGNP 300 PSMTPEDDTV WWESMILEEG VATPRCRGGA AGEPPPTSLW SLEGEKARDN EMSFDVDIWN 360 ALCADQEEMG II

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MFLLQSLVCL DYLWQLRNSL RISKDSLNLQ HVTAEICRRS KAYEEAWLHK SASLKAPQQK  60
LPSQLLVFSF DVALRHNASY LAIACSDGRG NLIYAWSFQT QQTDPTIGEA EAALKAIRGP  120
VNEELSAAME EAASFRRVRK GAWTEEEDDL LRKCVDKYGQ GEWRRVPLRA GLNRCRKSCR  180
LRWLNYLSPN IKRGEFTEDE IDMIVRLHKL LGNRWTLIAG ILSGRTANDV KNYWNTHMVR  240
KKTVPNEEIH QRKTKTKTNI IIKPRPRTLS KDFGKAKPAG NTAAAASNNT IPQDHLDGNP  300
PSMTPEDDTV WWESMILEEG VATPRCRGGA AGEPPPTSLW SLEGEKARDN EMSFDVDIWN  360
ALCADQEEMG II

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	5e-55	MYB family protein