PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM84748.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 440aa    MW: 48291.3 Da    PI: 8.2511
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM84748.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.91.5e-191052244
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                +i n++ r+ tf kR++g+lKKAeELS+LCd++ +v+i s+++
  OWM84748.1 10 FIANDRSRKMTFKKRKEGLLKKAEELSILCDIDTCVVIHSPDD 52
                799*************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    
MGRGKLVLRF IANDRSRKMT FKKRKEGLLK KAEELSILCD IDTCVVIHSP DDDSGRGPAV  60
WPHDPEKVKQ VIDRYFDESV DRRKRHATGL REFYMRRKQN LEKELGKVRP TNWAAKFPVS  120
DELLNGLSQD ELLSLPSVLR PKLESVKKRL LAAKENAGRS TSRMDPLQME QLNGSMMCHP  180
VWGSSASNSS STTIGNHQNN DNRCCYNYPF TVPTYDASFP QSSSLSTRQT GTRPLDQYNQ  240
MSGRLPAPEN PMLNCSGEDM LGNASSGLGS SLSCEKMASI TSGHQPASLR IITDGVTFAH  300
ETHPYVYGAA ILLDSWDRVL WVAVTSCFGS HPLLAEGIGC RLGLQLASAY PGEPALLITG  360
SQTLVAAVQP GAPQPLALSG VNSDIIHLLR SLPLLSCVCM PRKYVELAHQ LCMLAGQLGV  420
CGFWSADDLP SAMRSLFSVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-19M-type_MADS family protein