PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM84454.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C3H
Protein Properties Length: 329aa    MW: 36760.2 Da    PI: 7.2474
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM84454.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07108129426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + C++f++ G C+ Gd+C F+Hg
  OWM84454.1 108 AACPDFRK-GGCRKGDSCEFSHG 129
                 68******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MMLGERHRPP DTTAYDSPWL LPDDTTDEIL PPYSPDRLHD IISALQLYGR AGHDGGDPAE  60
ECDEFRMYEF KVRRCSRGRA HDWTECPYAH PGEKARRRDP RRHHYSAAAC PDFRKGGCRK  120
GDSCEFSHGV FECWLHPARY RTQPCKDGTN CTRRVCFFAH TPEQLRVVTP QHSPRSPKES  180
PLGKMALVTP STISPDDSPP MSPLARSVGT SGSPMTEMVL SLRNLQLDRV KSLPRSYNFS  240
GSGYGSPRRS MLRPGIQSLP STPTGGIGQA GYSECCWETG SEDEMAMERV ESGRSLRTKM  300
FEKLSQENSL GLGDPDPSPD VGWVSELVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-107C3H family protein