PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM84197.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family HD-ZIP
Protein Properties Length: 845aa    MW: 91961.6 Da    PI: 5.788
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM84197.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.9e-182987357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OWM84197.1 29 KYVRYTAEQVEALERVYSECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 87
                56789****************************************************97 PP
2START153.71.6e-481673712201
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  ++    +e+l+d++ W ++++  e+      g  g+++l++++ 
  OWM84197.1 167 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPS-KIAEILKDRPLWFRDCRNLEVFTMFPAGngGTIELIYTQV 264
                 7899******************************************************.7777777777*******9999999998888********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+++Ry+ +l+ g++v++++S++      +    s++vRae+lpSg+li+p+++g+s +++v++ +l++++++++lr+l++s+ + ++
  OWM84197.1 265 YAPTTLAPaRDFWTLRYTTTLENGSLVVCERSLSGSGAGANaavASQFVRAEMLPSGYLIRPCEGGGSIIHIVDNLNLEAWSVPEVLRPLYESSKVVAQ 363
                 **********************************9888877789******************************************************* PP

                 HHHHHHTX CS
       START 194 ktwvatlq 201
                 +++ a+l+
  OWM84197.1 364 RMTIAALR 371
                 ***99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    
MVVAHNRESS SSGGGGGGSL SKHLTDSGKY VRYTAEQVEA LERVYSECPK PSSIRRQQLI  60
RECPILSNIE PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNKLLME ENDRLQKQVS  120
QLVCENGYMR QQLHTTPTAT DASCDSVVTT PQHSMRDANN PAGLLSIAEE TLAEFLSKAT  180
GTAVDWVQMP GMKPGPDSVG IFAISQSCSG VAARACGLVS LEPSKIAEIL KDRPLWFRDC  240
RNLEVFTMFP AGNGGTIELI YTQVYAPTTL APARDFWTLR YTTTLENGSL VVCERSLSGS  300
GAGANAAVAS QFVRAEMLPS GYLIRPCEGG GSIIHIVDNL NLEAWSVPEV LRPLYESSKV  360
VAQRMTIAAL RFVRQIAQET NGEVVYGLGR QPAVLRNFSQ RLSRGFNDAI NGFNDDGWTL  420
LNCDGAEDVI ISINSSKNLN ATSAPNAFSF LGGILCAKAS MLLQNVPPAV LVRFLREHRS  480
EWADFNVDAY SAASLKAASY AYPGLRPTRF TGSQIIMPLG HTIEHEEMLE VIRLEGHSLA  540
QDDAFVSRDI HLLQICSGID ENAVGVCSEL VFAPIDEMFP DDAPLLPSGF RVIPLDSKSS  600
DAQENNLTNR TLDLASSLEV GSGAANSAGE GARSSSTRSV LTIAFQFPFE GSLQDNVASM  660
ARQYVRSVIS SVQRVAMAIS PSGMAPPVGP KLSPGSPEAL TLAHWICQSY NYHLGTELLG  720
SDSLGGDSVL KNLWNHQDAI LCCTLKSLPV FIFANQAGLD MLETTLVALQ DITLDKIFDE  780
AGRKALCDDF AKLMQQGFAC LPGGVCMSIM GRHVSYDQAI AWKVLSGEDN SVHCLAFSFV  840
NWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein