PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM84171.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

ARF

Protein Properties

Length: 756aa MW: 82738.1 Da PI: 5.6687

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM84171.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.5	1.3e-23	180	281	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ ++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + +++el OWM84171.1 180 FCKTLTASDTSTHGGFSVPRRAAEDCfppldykQLRP--SQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFL--RGEDGEL 274 99**************************9866554..559*********************************************..449999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++v+r+ OWM84171.1 275 RLGVRRA 281 ****985 PP
2	Auxin_resp	113.5	2e-37	306	387	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 aa+a+s+ks+F+v+Y+Pras++eFvv+++k+ ++++++++vG+Rfkm+f+++d++ rr++G+v+ + dldp++Wp+SkWr+L OWM84171.1 306 AANAISSKSTFDVFYSPRASHAEFVVPYKKYITSITNPICVGSRFKMRFDMDDAPDRRCTGVVTRIGDLDPYQWPKSKWRCL 387 799******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence
MEIDLNHAIS EVAVEKNTLC SSSSNGAGDC SSSSCSSNSS TPPPPVSSPS SSSSSSSSSI 60 FSELWHACAG PLATLPKKGS VVVYFPQGHL EQCAASSSSP AASLEFRGSD LLQPQIFCRV 120 MNVQLMANKE NDEVYTRVTL LPQPPELLGL NSEGREMVDL EGIEEGGGGS PALRSTPHMF 180 CKTLTASDTS THGGFSVPRR AAEDCFPPLD YKQLRPSQEL VAKDLHGVEW RFRHIYRGQP 240 RRHLLTTGWS IFVNQKNLVS GDAVLFLRGE DGELRLGVRR ALRPRNGLPS SVVGHQNSHL 300 AILSPAANAI SSKSTFDVFY SPRASHAEFV VPYKKYITSI TNPICVGSRF KMRFDMDDAP 360 DRRCTGVVTR IGDLDPYQWP KSKWRCLSVR WDDDIMNNHQ ERVSPWEIDP SVSLSAFSIQ 420 SSPRLKKLRS GPQITQPNDL VPGVVRLLDF EESLRSSKVL QGQENLCFAS PFFGGGAMNR 480 PEKANICDNM MAKPPVYPGF VESADRFPKV LQGQEICPLK ALTDNPEFCI GSWGNSSPGL 540 QNVYFPWGGS LKGSSSNPLN SSLLANIPRE ISSARSPYIP IRDEIRRGNV ETEAAHAESI 600 ITPPTSREKE GTRKNESFNG GFSGCKLFGF PLALEAPSPS PSPTPQASDL LNELEWLFSM 660 EGLLRDPEKG WRVLYTDSEN DVMVVGDDPW HEFCEVVCKI HIYTQEEVEK MTSGGLISDD 720 TQSCLDQSPV TVEPSKSSSV GQPDSSPTLC RSGLEV

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence

MEIDLNHAIS EVAVEKNTLC SSSSNGAGDC SSSSCSSNSS TPPPPVSSPS SSSSSSSSSI  60
FSELWHACAG PLATLPKKGS VVVYFPQGHL EQCAASSSSP AASLEFRGSD LLQPQIFCRV  120
MNVQLMANKE NDEVYTRVTL LPQPPELLGL NSEGREMVDL EGIEEGGGGS PALRSTPHMF  180
CKTLTASDTS THGGFSVPRR AAEDCFPPLD YKQLRPSQEL VAKDLHGVEW RFRHIYRGQP  240
RRHLLTTGWS IFVNQKNLVS GDAVLFLRGE DGELRLGVRR ALRPRNGLPS SVVGHQNSHL  300
AILSPAANAI SSKSTFDVFY SPRASHAEFV VPYKKYITSI TNPICVGSRF KMRFDMDDAP  360
DRRCTGVVTR IGDLDPYQWP KSKWRCLSVR WDDDIMNNHQ ERVSPWEIDP SVSLSAFSIQ  420
SSPRLKKLRS GPQITQPNDL VPGVVRLLDF EESLRSSKVL QGQENLCFAS PFFGGGAMNR  480
PEKANICDNM MAKPPVYPGF VESADRFPKV LQGQEICPLK ALTDNPEFCI GSWGNSSPGL  540
QNVYFPWGGS LKGSSSNPLN SSLLANIPRE ISSARSPYIP IRDEIRRGNV ETEAAHAESI  600
ITPPTSREKE GTRKNESFNG GFSGCKLFGF PLALEAPSPS PSPTPQASDL LNELEWLFSM  660
EGLLRDPEKG WRVLYTDSEN DVMVVGDDPW HEFCEVVCKI HIYTQEEVEK MTSGGLISDD  720
TQSCLDQSPV TVEPSKSSSV GQPDSSPTLC RSGLEV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein