PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM84061.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

ARF

Protein Properties

Length: 1111aa MW: 124227 Da PI: 6.8921

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM84061.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.2	6.4e-23	123	224	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ +l OWM84061.1 123 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfsM-QPPA-QEIVARDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEKSQL 217 99***************************954.4444.48**********************************************..4567777 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ OWM84061.1 218 LLGLRRA 224 9999986 PP
2	Auxin_resp	121.8	5.1e-40	249	331	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFvv+++k++kal+++vs+GmRf+m+fete+s rr++Gt++g+sdldpvrW++S+Wr+L+ OWM84061.1 249 AAHAAANNSPFTIFYNPRASPAEFVVPLAKYNKALYNQVSLGMRFRMMFETEESGIRRYMGTITGISDLDPVRWKGSQWRNLQ 331 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1111 aa Download sequence
MKVPSNGFSP GAGEGEKKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE 60 TTCVPSYPNL PSKLICMLHN VTLHADLETD EVYAQMTLRP YDQEALLASN MALKQSRQPA 120 EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP SLDFSMQPPA QEIVARDLHD NTWTFRHIYR 180 GQPKRHLLTT GWSVFVSTKR LFAGDSVLFI RDEKSQLLLG LRRANRMQPA LSSSVISSDS 240 MHIGILAAAA HAAANNSPFT IFYNPRASPA EFVVPLAKYN KALYNQVSLG MRFRMMFETE 300 ESGIRRYMGT ITGISDLDPV RWKGSQWRNL QVGWDESTAG ERPSRVSIWE IEPVLTPFYI 360 CPPPFLRPKF PRQPGMPEDE SDIENAFKRA MPWIGDEFGM KDSSNSIFPG LSLVQWMSMQ 420 QGNQLQAAQP GLVPPLVSSL GLHGTNFGLD DPSKLLSFQS PVLPPQSNHN NFQLNKTNPP 480 NTLAQLPQPN VAWSQQHQLQ QLLQQQQQQQ QQQQRQPTQQ AQQQHQQLQQ QLQQQPQQQS 540 QQQMVQPLVH NGVVASNPIP SQTASQQPAL FPQIQQQQQP LLATNAQSLQ TTHGTAKCSV 600 QISSSLPQDP KFPSQMEQQS SLLQRHQQQQ QQQHQQQQQQ QQQQHQPSSL LQQSWSQRAQ 660 QQQQQQLSPQ LAQLSQQNNL SEQQLQLQFL QKLQQQQQQQ QQQQQQQQLF SPVSPLLQPQ 720 LPQSLPQSQQ LQQLQLPQQQ QLQQVSCNTL SASPLLQSQQ KPVTTIRPLS GLSENDAPSC 780 STSPSTNNCH VPTSNFLNKN QQNSQAVFPV LEPLSNNHLI QDNHHHQVKP EARMKTEMPI 840 SKAPDSLKYK TALTDQLEVS SSATSYCLDA STIQQNYSLP TFGLDGDVQS NPQTSSPFAT 900 NNIDNLAPDT LLSRGFDSQK DLQNLLANYG GNPRDIDTEL STAAISPQSF GVPNMPFKAG 960 CSNDVGINDT GVLNGGIWAN QRVRTYTKVR KRGSVGRSID VTRYGGYEDL RRDLARMFGI 1020 EGQLEDPQRT EWKLVYMDRE NDMLLVGDDP WEEFVSNVQS IKILSSAEVQ QMSLEGSLGN 1080 LPVSNQACSG TDSGNAWRNH YDDNSAASFN R

Sequence ? help Back to Top

Protein Sequence Length: 1111 aa Download sequence

MKVPSNGFSP GAGEGEKKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TTCVPSYPNL PSKLICMLHN VTLHADLETD EVYAQMTLRP YDQEALLASN MALKQSRQPA  120
EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP SLDFSMQPPA QEIVARDLHD NTWTFRHIYR  180
GQPKRHLLTT GWSVFVSTKR LFAGDSVLFI RDEKSQLLLG LRRANRMQPA LSSSVISSDS  240
MHIGILAAAA HAAANNSPFT IFYNPRASPA EFVVPLAKYN KALYNQVSLG MRFRMMFETE  300
ESGIRRYMGT ITGISDLDPV RWKGSQWRNL QVGWDESTAG ERPSRVSIWE IEPVLTPFYI  360
CPPPFLRPKF PRQPGMPEDE SDIENAFKRA MPWIGDEFGM KDSSNSIFPG LSLVQWMSMQ  420
QGNQLQAAQP GLVPPLVSSL GLHGTNFGLD DPSKLLSFQS PVLPPQSNHN NFQLNKTNPP  480
NTLAQLPQPN VAWSQQHQLQ QLLQQQQQQQ QQQQRQPTQQ AQQQHQQLQQ QLQQQPQQQS  540
QQQMVQPLVH NGVVASNPIP SQTASQQPAL FPQIQQQQQP LLATNAQSLQ TTHGTAKCSV  600
QISSSLPQDP KFPSQMEQQS SLLQRHQQQQ QQQHQQQQQQ QQQQHQPSSL LQQSWSQRAQ  660
QQQQQQLSPQ LAQLSQQNNL SEQQLQLQFL QKLQQQQQQQ QQQQQQQQLF SPVSPLLQPQ  720
LPQSLPQSQQ LQQLQLPQQQ QLQQVSCNTL SASPLLQSQQ KPVTTIRPLS GLSENDAPSC  780
STSPSTNNCH VPTSNFLNKN QQNSQAVFPV LEPLSNNHLI QDNHHHQVKP EARMKTEMPI  840
SKAPDSLKYK TALTDQLEVS SSATSYCLDA STIQQNYSLP TFGLDGDVQS NPQTSSPFAT  900
NNIDNLAPDT LLSRGFDSQK DLQNLLANYG GNPRDIDTEL STAAISPQSF GVPNMPFKAG  960
CSNDVGINDT GVLNGGIWAN QRVRTYTKVR KRGSVGRSID VTRYGGYEDL RRDLARMFGI  1020
EGQLEDPQRT EWKLVYMDRE NDMLLVGDDP WEEFVSNVQS IKILSSAEVQ QMSLEGSLGN  1080
LPVSNQACSG TDSGNAWRNH YDDNSAASFN R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein