PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM83291.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family GRAS
Protein Properties Length: 428aa    MW: 47981.4 Da    PI: 5.8328
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM83291.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS389.83e-119564282374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++ L++cA+ +s++d + a  l+  l+++++ +g+p+qRl ay++e+L+ar+ +s++ +y+ l++ e +     + ++++ ++++++P+ kf+++ aN 
  OWM83291.1  56 KQGLIACAKSISDSDISTAVGLMDVLEKMVTISGEPIQRLGAYLLEGLRARIESSGNMIYRRLRCDEPT---GPQLMTSMYMLYQICPYWKFAYVSANA 151
                 688*****************************************************************9...999999999****************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                  I eave+e ++HiiDf++ qG QW+++ ++L+ R++g+ps+RiTgv++++s   +   le +++rL+ +Ae++gvpfef+  v    ++++ e+L ++
  OWM83291.1 152 VIQEAVENEAKIHIIDFQVAQGSQWVPFVESLSHRAGGAPSIRITGVDDSQSAlaRGGGLEIIQQRLSMVAESCGVPFEFRG-VPMLDHEVRAEHLMIQ 249
                 *************************************************99999999*************************.56677999******** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl..eaklpreseerikvErellgrei 294
                 p+Ea++Vn+ + lh+++desvs+e++rd++L+lv++lsPkvv++ eqe+++n+++F +rfle+l+yysa+f+s+  + ++pr++ +ri  E+++++r+i
  OWM83291.1 250 PDEAVVVNFPYVLHHIPDESVSIENHRDRLLRLVRGLSPKVVTLLEQESNTNTSPFYTRFLETLDYYSAMFESIdaAPTAPRDDPQRIRAEQHCVARDI 348
                 **************************************************************************54457999***************** PP

        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 vn+vaceg er+erhe l+kWr+r+++aGF++ pls +++  +  +l+  +s  yr+ee++g+l+l W++r++v++SaWr
  OWM83291.1 349 VNMVACEGPERVERHELLGKWRSRFSMAGFQQRPLSCSVTGAVLDMLEGEYSPNYRIEERNGALYLNWRNRAMVTCSAWR 428
                 ***************************************************999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    
MSAPAFSNSV HDCQPTVSTS SFTSSWDLGT YGGRSNISNK GRRNWDNQVI SAMDLKQGLI  60
ACAKSISDSD ISTAVGLMDV LEKMVTISGE PIQRLGAYLL EGLRARIESS GNMIYRRLRC  120
DEPTGPQLMT SMYMLYQICP YWKFAYVSAN AVIQEAVENE AKIHIIDFQV AQGSQWVPFV  180
ESLSHRAGGA PSIRITGVDD SQSALARGGG LEIIQQRLSM VAESCGVPFE FRGVPMLDHE  240
VRAEHLMIQP DEAVVVNFPY VLHHIPDESV SIENHRDRLL RLVRGLSPKV VTLLEQESNT  300
NTSPFYTRFL ETLDYYSAMF ESIDAAPTAP RDDPQRIRAE QHCVARDIVN MVACEGPERV  360
ERHELLGKWR SRFSMAGFQQ RPLSCSVTGA VLDMLEGEYS PNYRIEERNG ALYLNWRNRA  420
MVTCSAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.11e-178GRAS family protein