PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM83178.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

HRT-like

Protein Properties

Length: 818aa MW: 91521.9 Da PI: 10.1627

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM83178.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	50.5	3.5e-16	297	326	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv l++ ++Ckr+PvkgRKRC+eHKGm++ OWM83178.1 297 CGVYLGNRNICKRPPVKGRKRCAEHKGMKV 326 ****************************97 PP
2	HRT-like	56.5	4.5e-18	372	402	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+i++dGs Ckr+Pv+gR+RC eHKG+Ri OWM83178.1 372 ICGFIMGDGSSCKRPPVQGRQRCSEHKGRRI 402 8*****************************7 PP
3	HRT-like	50.9	2.6e-16	695	724	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 C v l++G++Ckr+PvkgRKRC+eHKGm++ OWM83178.1 695 CRVYLGNGNICKRPPVKGRKRCAEHKGMKV 724 999*************************97 PP
4	HRT-like	58.3	1.2e-18	770	800	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+i++dGs Ckr+Pv+gRKRC eHKG+Ri OWM83178.1 770 ICGFIMGDGSSCKRPPVQGRKRCSEHKGRRI 800 8*****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence
MAARRDNTTV AVTGARPKRE DCGRTKHDSA FSDWKLLNSM TMRCQFADLA AMRNLPALIG 60 PSDWEDYSLG KEGSARYRVH NLPPSSSPGV YELGIAVTRT KSARETRKLN PSNIIIVYTG 120 QADGVRTRLQ QYGRSGAHLG NCSSTARAND DSQSTVSHKE LGLFREILSR DYSIVFRWAP 180 MNNKGDALGM EAELLKTFDY AWNKGSNGAR RPHDILQKLE EASSTAYRVS RTSKKLLPFL 240 QEKGGIRIHG RLPLDTKTVA HAEEENNFFN GIFKFNRSNP RVVLDRSCFN EDETGFCGVY 300 LGNRNICKRP PVKGRKRCAE HKGMKVNAQP WSEVPDQHGI TDPGLKNLTF HVEKVKFGSV 360 SLSAGESFTS VICGFIMGDG SSCKRPPVQG RQRCSEHKGR RIVTLNSVSS RNQEINYVQN 420 KGHNISENFQ VGKLGLLYSS ETCNVRSNTM TVCGVLIGPS DWEDYSLGKE GSARYRVHNL 480 PPSSSPGLYE LGTAVTHTKS ARETRKLDPS YIIVVYIGQA DCVRTRLQQY GRSGAHLGNC 540 FSTARVNDDS QSTCSNKQLG LFREILSRDY SIVFRWAPMN NKGEALRMEA LLLNTFDYAW 600 NKGSNGARRP HDILRKIEEA SSAAYRVSST LKKLFPFLQK KVGIRIHGRL PFDTKTAAHA 660 EEENNFFNGI FKFNRSNPRV VLDRSCFNED ETRFCRVYLG NGNICKRPPV KGRKRCAEHK 720 GMKVNARPWS EVPDQHGITD PGLKNLTFHV EKVNFGSVNL SAGESLAPVI CGFIMGDGSS 780 CKRPPVQGRK RCSEHKGRRI VTLNFRVKQE SRKILCAE

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence

MAARRDNTTV AVTGARPKRE DCGRTKHDSA FSDWKLLNSM TMRCQFADLA AMRNLPALIG  60
PSDWEDYSLG KEGSARYRVH NLPPSSSPGV YELGIAVTRT KSARETRKLN PSNIIIVYTG  120
QADGVRTRLQ QYGRSGAHLG NCSSTARAND DSQSTVSHKE LGLFREILSR DYSIVFRWAP  180
MNNKGDALGM EAELLKTFDY AWNKGSNGAR RPHDILQKLE EASSTAYRVS RTSKKLLPFL  240
QEKGGIRIHG RLPLDTKTVA HAEEENNFFN GIFKFNRSNP RVVLDRSCFN EDETGFCGVY  300
LGNRNICKRP PVKGRKRCAE HKGMKVNAQP WSEVPDQHGI TDPGLKNLTF HVEKVKFGSV  360
SLSAGESFTS VICGFIMGDG SSCKRPPVQG RQRCSEHKGR RIVTLNSVSS RNQEINYVQN  420
KGHNISENFQ VGKLGLLYSS ETCNVRSNTM TVCGVLIGPS DWEDYSLGKE GSARYRVHNL  480
PPSSSPGLYE LGTAVTHTKS ARETRKLDPS YIIVVYIGQA DCVRTRLQQY GRSGAHLGNC  540
FSTARVNDDS QSTCSNKQLG LFREILSRDY SIVFRWAPMN NKGEALRMEA LLLNTFDYAW  600
NKGSNGARRP HDILRKIEEA SSAAYRVSST LKKLFPFLQK KVGIRIHGRL PFDTKTAAHA  660
EEENNFFNGI FKFNRSNPRV VLDRSCFNED ETRFCRVYLG NGNICKRPPV KGRKRCAEHK  720
GMKVNARPWS EVPDQHGITD PGLKNLTFHV EKVNFGSVNL SAGESLAPVI CGFIMGDGSS  780
CKRPPVQGRK RCSEHKGRRI VTLNFRVKQE SRKILCAE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	9e-85	HRT-like family protein