PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM82659.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | C3H | ||||||||
Protein Properties | Length: 359aa MW: 38218.2 Da PI: 8.3527 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.4 | 1e-07 | 161 | 185 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+ C+ + Ck+Gd+C+FaHg OWM82659.1 161 KTRMCNKYNTAEGCKFGDKCHFAHG 185 89**********************8 PP | |||||||
2 | zf-CCCH | 39 | 1.3e-12 | 326 | 350 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++fa+ G C +G+rC+FaHg OWM82659.1 326 YKTKLCDNFAK-GSCTFGERCNFAHG 350 9**********.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence |
MSKGLSLSIY TKTRAVTGAF DEIEVWFLLG GNFVIAAGWR EWDYNSGCYV LFRLSNWVYG 60 DLRNDDSTPA CLGFWASAFN IDHFNGLSTQ WATPSGMGPK STISITSGCQ FGEACHFSHY 120 VPGGYNAVAQ MMNLPPAVPP PSRAMPGPPP VPNGSSSPAV KTRMCNKYNT AEGCKFGDKC 180 HFAHGHWELG KPVAASFDDP RAMAPIPPRF GSRMELLPPP SFGGPVSSFG ASATAKISVD 240 ASLAGAIIGK GGVNSKQICR QTGAKLSIRD HESDPSLRNI ELEGTFEQIK EASALVRELI 300 VNVSAMSSHA KGHGSQGGPA PSGSNYKTKL CDNFAKGSCT FGERCNFAHG AAELRRSAV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 7e-58 | C3H family protein |