PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM82468.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 241aa MW: 28389.6 Da PI: 5.8324

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM82468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.6	1.9e-15	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEd++lv v +lG + W+ Ia+ g++R++k+c++rw +yl OWM82468.1 15 KGIWLEEEDDQLVAFVSLLGDRKWDHIAKVSGLRRSGKSCRLRWKNYL 62 577*******************************************97 PP
2	Myb_DNA-binding	51.7	2e-16	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r + ++eE+ ++v+++ q+G++ W++Ia+ ++ gRt++++k++w +yl OWM82468.1 68 RENISAEEERIIVQLHGQWGNK-WSKIAQFLP-GRTDNEIKNYWKTYL 113 56779***************.*****.***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MSHRAVMREE ETMRKGIWLE EEDDQLVAFV SLLGDRKWDH IAKVSGLRRS GKSCRLRWKN 60 YLRPNLKREN ISAEEERIIV QLHGQWGNKW SKIAQFLPGR TDNEIKNYWK TYLRKRLQVP 120 QDDFQSRTSE SNQDTFPDTC DKYTNNDHDH ERCSSAADGL LSASGTCSDH LEASNYENWM 180 NSPYESRLLD WISEPLYSQG EMDRVRHLDS VLISEYPIWD LDGGKPLIWD HSISLWDCKD 240 H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	5e-55	MYB family protein