PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OWM82419.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 221aa MW: 23227 Da PI: 7.606 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.4 | 6.4e-35 | 55 | 142 | 4 | 83 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa....sec.....eaesssssas 83 ++++++hTkv+gR+RR+R++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i ++tg++++++ s + ++s+sss+s OWM82419.1 55 TSSSSKDRHTKVNGRGRRIRIPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIVAATGSGTIPSgpvsS-TaralpPPSSRSSSVS 142 56789*********************************************************8888843321.1233333333333333 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence |
MVSDSPFHQL PSSAPPRSSD HTPATSLAVI PAAADPPSTS NSQSSGPLSR KAGPTSSSSK 60 DRHTKVNGRG RRIRIPALCA ARIFQLTREL GHRSDGETIE WLLRQAEPSI VAATGSGTIP 120 SGPVSSTARA LPPPSSRSSS VSCPVQPAEG HAVVPFPLAP SGFRLDLCPP MGFSYSSAAN 180 AAEDAVNGYR HMPFTALLLQ PAAAMEKDEE RKQEEVLAEE Q |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37000.1 | 7e-40 | TCP family protein |