PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM82071.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 379aa MW: 42428.3 Da PI: 6.3119

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM82071.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.6	7.6e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+ +++++G + +W + ++++g++R++k+c++rw++yl OWM82071.1 14 KGPWSPEEDATLKSYIEEHG-PvgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79****************.559**********************97 PP
2	Myb_DNA-binding	38.7	2.3e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd+++ + G++ W+ Ia+ ++ gRt++++k++w++ OWM82071.1 69 GGFSEEEDKIICSLYINIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDATLKSYIE EHGPVGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDKIIC SLYINIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLWGK 120 QRNKEHHARK NNSKRGSTNI SSENDNFSVI SGTASDWSEL QQEVTKAPLA NMNQNPNLTT 180 SDQSSVWELL VQLGGRFSPN YNQEPVPTNT NMVQNRNDII PHSSYYNPFE RNMLLASSQP 240 LGNSLTGALP TLYDTSGLDN VNSTVVLDPN MLQDFSMSEV DKYHGRLNLL SDGLNTSNNY 300 GTDGMMNGSI CSSALSNNYE GSNIIWEEIS SLLADNSTCR PPLLCDYEAH YQSLEGGWRG 360 PEDSCFEDQP RLYVPVGHS

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDATLKSYIE EHGPVGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDKIIC SLYINIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLWGK  120
QRNKEHHARK NNSKRGSTNI SSENDNFSVI SGTASDWSEL QQEVTKAPLA NMNQNPNLTT  180
SDQSSVWELL VQLGGRFSPN YNQEPVPTNT NMVQNRNDII PHSSYYNPFE RNMLLASSQP  240
LGNSLTGALP TLYDTSGLDN VNSTVVLDPN MLQDFSMSEV DKYHGRLNLL SDGLNTSNNY  300
GTDGMMNGSI CSSALSNNYE GSNIIWEEIS SLLADNSTCR PPLLCDYEAH YQSLEGGWRG  360
PEDSCFEDQP RLYVPVGHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	3e-78	MYB family protein