PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM81102.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 457aa MW: 49468.8 Da PI: 8.4537

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM81102.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.1	7.1e-09	122	146	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G +CkF H+ OWM81102.1 122 GEKDCAHYMLTRTCKFGHSCKFDHP 146 7889********************8 PP
2	zf-CCCH	24.2	5.8e-08	160	179	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +f +t C++G+rCkF+H++ OWM81102.1 160 YFIKTQRCSFGSRCKFNHPK 179 8999**************96 PP
3	zf-CCCH	41.7	2e-13	201	226	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++C f+++tGtCk+G++CkF+H++ OWM81102.1 201 QEPPCAFYMKTGTCKFGATCKFNHPK 226 689*********************96 PP
4	zf-CCCH	38.4	2e-12	282	305	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ OWM81102.1 282 EVDCPFYLKTGSCKYGATCRYNHP 305 689********************9 PP
5	zf-CCCH	36.8	6.3e-12	366	387	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++tG+Ck+ +rCkF+H+ OWM81102.1 366 ECDYYMKTGECKFSERCKFHHP 387 7********************8 PP
6	zf-CCCH	39.1	1.3e-12	420	441	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++CkF H+p OWM81102.1 420 CPYYMKTGTCKYGATCKFDHPP 441 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MANYLYAYNR SYGIASTVPG SSASPEAAFK HSTAALASSV YQLPSSDVLG SSSADAGGTA 60 DAAYTWDAAG IKRSSQALYY QSIYGAQSTI GQTEAWYTSN SLSKRPRVKN ASNLPIYPQR 120 PGEKDCAHYM LTRTCKFGHS CKFDHPIWVP EGGIPDWKEY FIKTQRCSFG SRCKFNHPKD 180 KNSTLGAPGS GNASALPERP QEPPCAFYMK TGTCKFGATC KFNHPKDIMV LHTAQENGDG 240 ELKDSLSNTG GMIGDVNIAQ PLVNFSPALL HNSKGLPVRL GEVDCPFYLK TGSCKYGATC 300 RYNHPDRNAI NPPAAAIDYT ILAPSAGIPN IVTPVASIYP VVDPTLPQTM LGVVPSVYPQ 360 RPGQMECDYY MKTGECKFSE RCKFHHPIDR SAQSQKVTNQ SEEVKLTLAG LPRREGAAHC 420 PYYMKTGTCK YGATCKFDHP PPGEVIATAA SSQQGTS

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MANYLYAYNR SYGIASTVPG SSASPEAAFK HSTAALASSV YQLPSSDVLG SSSADAGGTA  60
DAAYTWDAAG IKRSSQALYY QSIYGAQSTI GQTEAWYTSN SLSKRPRVKN ASNLPIYPQR  120
PGEKDCAHYM LTRTCKFGHS CKFDHPIWVP EGGIPDWKEY FIKTQRCSFG SRCKFNHPKD  180
KNSTLGAPGS GNASALPERP QEPPCAFYMK TGTCKFGATC KFNHPKDIMV LHTAQENGDG  240
ELKDSLSNTG GMIGDVNIAQ PLVNFSPALL HNSKGLPVRL GEVDCPFYLK TGSCKYGATC  300
RYNHPDRNAI NPPAAAIDYT ILAPSAGIPN IVTPVASIYP VVDPTLPQTM LGVVPSVYPQ  360
RPGQMECDYY MKTGECKFSE RCKFHHPIDR SAQSQKVTNQ SEEVKLTLAG LPRREGAAHC  420
PYYMKTGTCK YGATCKFDHP PPGEVIATAA SSQQGTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-173	C3H family protein