PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM80826.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 515aa MW: 54016 Da PI: 8.8323

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM80826.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OWM80826.1 57 FVCEICNKGFQRDQNLQLHRRGH 79 89*******************88 PP
2	zf-C2H2	15.7	4.3e-05	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ OWM80826.1 135 WKCERCSKKYAVQSDWKAHMKTC 157 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MENASSLAVS SASVEVATAS SLAEPSPKKK RNLPGMPDPD AEVIALSPKT LLATNRFVCE 60 ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTG GKDQVRKKVY VCPETTCVHH NPARALGDLT 120 GIKKHFCRKH GEKKWKCERC SKKYAVQSDW KAHMKTCGTK EYKCDCGTLF SRRDSFITHR 180 AFCDALAEES SRAQNMVQPL PEGNLNRAKA ASNVASPPPP PLTPSTTVVS PVLSIQSSDL 240 PENATDVLPP VPAVAARATS STGTGGAPVD GGGGGFGSTY TSPTQLLPPQ LLPQRSPSSL 300 SNMVCPAVLP DQCGSLPSPS TTEPTSLSLF LSSTASSIFS RPEQNPRLFA PSLQPAMSAT 360 ALLQKAAQMG AAASNSSLLR GLSLAMSSTS YSNDTTASTS NATHWGGHPK AENDDTAGHG 420 LGLSLPSQES SDMSGLMMGQ SSLFGTKPMT LDFLGLGMSP SVATTTGLSA FLTSLEGGFG 480 AAPPTSFGGG GGPQSSVRAA WDGELERKPS GTSFL

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MENASSLAVS SASVEVATAS SLAEPSPKKK RNLPGMPDPD AEVIALSPKT LLATNRFVCE  60
ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTG GKDQVRKKVY VCPETTCVHH NPARALGDLT  120
GIKKHFCRKH GEKKWKCERC SKKYAVQSDW KAHMKTCGTK EYKCDCGTLF SRRDSFITHR  180
AFCDALAEES SRAQNMVQPL PEGNLNRAKA ASNVASPPPP PLTPSTTVVS PVLSIQSSDL  240
PENATDVLPP VPAVAARATS STGTGGAPVD GGGGGFGSTY TSPTQLLPPQ LLPQRSPSSL  300
SNMVCPAVLP DQCGSLPSPS TTEPTSLSLF LSSTASSIFS RPEQNPRLFA PSLQPAMSAT  360
ALLQKAAQMG AAASNSSLLR GLSLAMSSTS YSNDTTASTS NATHWGGHPK AENDDTAGHG  420
LGLSLPSQES SDMSGLMMGQ SSLFGTKPMT LDFLGLGMSP SVATTTGLSA FLTSLEGGFG  480
AAPPTSFGGG GGPQSSVRAA WDGELERKPS GTSFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-110	C2H2 family protein