PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM80595.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

HD-ZIP

Protein Properties

Length: 281aa MW: 31793.1 Da PI: 6.8822

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM80595.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.4	6.9e-20	131	185	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq+ +Le F+ +++++ e++e+LA++l+L rqV vWFqNrRa+ k OWM80595.1 131 RKKLRLSKEQISILEGSFKAHSTLNPEQKEDLARQLSLRPRQVEVWFQNRRARIK 185 788899***********************************************87 PP
2	HD-ZIP_I/II	125.3	2.8e-40	131	220	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq+++LE sF+++++L+pe+K++lar+L l+prqv+vWFqnrRAR+k+kq+E+d+e+Lkr+++al+een+rL++ev+eL+++ OWM80595.1 131 RKKLRLSKEQISILEGSFKAHSTLNPEQKEDLARQLSLRPRQVEVWFQNRRARIKLKQIEVDCESLKRRCEALREENRRLQEEVQELKSQ 220 69*************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence
MESGDACNTM LALGLGFRYE LLSSGQRSEN QHRTLRDRDD DERLLPSLSL GLSEAAYQSA 60 SKIVGIGMTD KYAPGEPTTL IDLTREASSH LNCSSTMKRS GERDLQEAAE LEKKSMMMMI 120 SDEDEDCSTA RKKLRLSKEQ ISILEGSFKA HSTLNPEQKE DLARQLSLRP RQVEVWFQNR 180 RARIKLKQIE VDCESLKRRC EALREENRRL QEEVQELKSQ TPAATMPLLM QIPSTTLPVM 240 CPSCERIGTR SDDRLPTRFF SSSVTKSRLC DIHFSNPSAA C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	180	188	RRARIKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	8e-52	HD-ZIP family protein