PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM80171.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 505aa MW: 56219.1 Da PI: 7.0788

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM80171.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	80	97	2	19
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk Fs++ ++ H OWM80171.1 80 VCENCGKEFSSWKSFLEH 97 6**************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
MDQQQSNFKH FCKICKKGFM CGRALGGHMR AHGIGDEGGH LDDEDPASDW EDKHGEPIPP 60 GNKRMYALRT NPNRLKSCRV CENCGKEFSS WKSFLEHGKC TSEDVESLVS SHDSEDEDGM 120 GRRGCGWSKR KRSLRIKIDS GNSNCPSSEE EDLANCLMML SNAKVDASMA EPEESCASAS 180 KDEERRKPIN FVSPFTYRVP SNNNLDKAKG VAARGLFECK ACKKVFNSHQ ALGGHRASHK 240 KVKGCFAARL DTVDDYIPDD DVITHEEFFP TKSTSSLPFD HGPNSLVPST SKRKSKVHEC 300 SICHRVFSSG QALGGHKRCH WITSNSPDTS SLAKLQQFHD HLEQIQQRPK FIEADRLALK 360 LDLNLPAPSD ELAGARRGAV ATGFERSTEI YLQSWLGLDR KEREVMQSHH HHPHPEVNNN 420 EKECGSNKND DTVHNNNNNN NNNNNENTES NVDDEGDSKA KLAKLSELKD MNISGGGSSS 480 SWLQVGIGST TTTDHHRQQH ERSSK

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

MDQQQSNFKH FCKICKKGFM CGRALGGHMR AHGIGDEGGH LDDEDPASDW EDKHGEPIPP  60
GNKRMYALRT NPNRLKSCRV CENCGKEFSS WKSFLEHGKC TSEDVESLVS SHDSEDEDGM  120
GRRGCGWSKR KRSLRIKIDS GNSNCPSSEE EDLANCLMML SNAKVDASMA EPEESCASAS  180
KDEERRKPIN FVSPFTYRVP SNNNLDKAKG VAARGLFECK ACKKVFNSHQ ALGGHRASHK  240
KVKGCFAARL DTVDDYIPDD DVITHEEFFP TKSTSSLPFD HGPNSLVPST SKRKSKVHEC  300
SICHRVFSSG QALGGHKRCH WITSNSPDTS SLAKLQQFHD HLEQIQQRPK FIEADRLALK  360
LDLNLPAPSD ELAGARRGAV ATGFERSTEI YLQSWLGLDR KEREVMQSHH HHPHPEVNNN  420
EKECGSNKND DTVHNNNNNN NNNNNENTES NVDDEGDSKA KLAKLSELKD MNISGGGSSS  480
SWLQVGIGST TTTDHHRQQH ERSSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	1e-26	C2H2 family protein