PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM79889.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family NF-YA
Protein Properties Length: 291aa    MW: 32277 Da    PI: 9.6116
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM79889.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.41.5e-30164220158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep+YVN+KQy++Il+RRq+Rakl++++kl +k rkpylheSRh hA+rR RgsgG+F
  OWM79889.1 164 NEPIYVNPKQYHAILRRRQHRAKLKAQSKL-SKDRKPYLHESRHLHAIRRLRGSGGQF 220
                 59****************************.*************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MSIGNSTISQ GEQSKNLSLK TGIVPLQTSC NYKQTMTSQF QDQESSSTQS TGQSYSYPEM  60
HQNDELNRSG QAAVSVQTEC NASDQKSMEG QVDSAVSVIS QETLFSLPQL DSRQSLVCPP  120
LHNAELYFSG LMANYGPHQT MVLHPNLMGM GHPRVPLSFD PMKNEPIYVN PKQYHAILRR  180
RQHRAKLKAQ SKLSKDRKPY LHESRHLHAI RRLRGSGGQF LSTKKHQEES SQPASTIGGS  240
KSRDSQTSVN RDVGSTRSCS DVTAEYIFPN SNSRFPGYVS GSSANGHKWL L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.11e-38NF-YA family protein