PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM79829.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family HD-ZIP
Protein Properties Length: 724aa    MW: 79190.5 Da    PI: 5.8483
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM79829.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.71.3e-2060115156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  OWM79829.1  60 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRQLGLEPLQVKFWFQNKRTQMK 115
                 688999***********************************************999 PP
2START221.62.5e-692484681206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela +a++e v++ +++ep+W+ s     + +n+de++++f+++ +     +++ea+r+ +vv+m++ +lve+l+d++ qW++ +     +a+tlev+s
  OWM79829.1 248 ELAVAAMEEMVRMSQLGEPLWTVSLdgatDVLNEDEYIRTFPRGIGpkpsgFKSEASRENAVVIMNHINLVEILMDVN-QWSNVFSgivsRAATLEVLS 345
                 57899********************9*****************999********************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 +g      galq+m+ae+q++splvp R+++fvRy++q+ + +w++vdvS+d+ ++ p+    +R++++pSg++i++++ng+skv+wvehv++++r +h
  OWM79829.1 346 TGvagnynGALQVMTAEFQVPSPLVPtRESYFVRYCKQHADSTWAVVDVSLDNLRPSPT----ARCRRRPSGCVIQEMPNGYSKVVWVEHVEVDDRGVH 440
                 ********************************************************996....************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 +l+++lv+sg+a+gak+wvatl+rqce+
  OWM79829.1 441 SLYKQLVNSGHAFGAKRWVATLDRQCER 468
                 **************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    
MFQPNLMDGG HHQLHPLEMA QNNSEGDLAR LRDEEFDSTK SGSENQEGAS GDDQEPRQKK  60
KRYHRHTQHQ IQEMEAFFKE CPHPDDKQRK ELSRQLGLEP LQVKFWFQNK RTQMKTQHER  120
HENTQLRAEN EKLRADNMRY REALSNASCP NCGGPTAIGE MSFDEHHMRL ENARLREEID  180
RISAIAAKYV GKPVVNYPIL SSPMAPRPLE LGVGGFGGQP GGEMFGGAGD LLKSISGPTE  240
ADKPMIIELA VAAMEEMVRM SQLGEPLWTV SLDGATDVLN EDEYIRTFPR GIGPKPSGFK  300
SEASRENAVV IMNHINLVEI LMDVNQWSNV FSGIVSRAAT LEVLSTGVAG NYNGALQVMT  360
AEFQVPSPLV PTRESYFVRY CKQHADSTWA VVDVSLDNLR PSPTARCRRR PSGCVIQEMP  420
NGYSKVVWVE HVEVDDRGVH SLYKQLVNSG HAFGAKRWVA TLDRQCERLA SAMATNIPTG  480
EVGVITSQEG RKSMLKLAER MVISFCAGVS ASTAHTWTTL SGTGADDVRV MTRKSVDDPG  540
RPPGIVLSAA TSFWLPVPPK RVFDFLRDEN SRSEWDILSN GGVVQEMAHI ANGRDTGNCV  600
SLLRVNSANS SQSNMLILQE SCTDSTGSFV IYAPVDIVAM NVVLNGGDPD YVALLPSGFA  660
ILPDGSAAPG GEVGPSGSLL TVAFQILVDS VPTAKLSLGS VATVNSLIAC TVERIRASLS  720
CETA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0HD-ZIP family protein