PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM79548.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 684aa MW: 76813.2 Da PI: 7.8224

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM79548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rH+r+H OWM79548.1 77 KCDKCNREFFSPINYRRHMRVH 98 7********************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence
MSVVKVKTSN ALGGVKLEEG NESLNTLARQ GIGKEPFLSV PRSTDNPVQL IQFLHAFDNQ 60 DIPGWPFLTQ VKVPMQKCDK CNREFFSPIN YRRHMRVHHR LKKLDKDSMK NRDLLRVFWD 120 KLSADEAKEI VALKNASVED LPGATVIKTL ASLIRKPGFP PLPHFCIKSG SALLEIVQAR 180 PSRFSISSQE LFSILDDASE KTFLSGPAIS MQKYLFDGEA AKIGLDTKNL VAFTSFLLEQ 240 KLIEAWLADK DAEALRCQKL LVEEEEAAQK RQAELLERKR RKKLRQKEQK AKEHRNEEVV 300 RDSFNSMAAE PPSQASAHDN ASDSESQDLD GPSEISLFEM SQNPSVEDVD SEANSGVGFV 360 DNDSNACQNI EPRSHQSLGV PNWHAPPKPR AMSNGFYQMK NSSSSKPEFK SKNGIRDLRV 420 AHTVNNKKVW SRKPKPEKDG ENLKFRVQEA FVQVGQDKEH ELLIGSIAVN LGSSHTREKC 480 DNAHFPEDDG TQEYQPSKKF NNAHEKNSRS DSNHSGASQS TVKHWRRRQE VKDSVPVQRE 540 SEVNSSFLKD DDQTVNNEEC LRSSSLNGHH CEIECHSLPS ESNRPGNLHF SSDAARTFLS 600 QRWKEAIAAD HVKLVLLPEL EPSAAGTQDC TDVSDSDKRS ILRNAEDRMV NGPSASGPAK 660 PELKMKPEKG LKKRYILKQR ANDT

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence

MSVVKVKTSN ALGGVKLEEG NESLNTLARQ GIGKEPFLSV PRSTDNPVQL IQFLHAFDNQ  60
DIPGWPFLTQ VKVPMQKCDK CNREFFSPIN YRRHMRVHHR LKKLDKDSMK NRDLLRVFWD  120
KLSADEAKEI VALKNASVED LPGATVIKTL ASLIRKPGFP PLPHFCIKSG SALLEIVQAR  180
PSRFSISSQE LFSILDDASE KTFLSGPAIS MQKYLFDGEA AKIGLDTKNL VAFTSFLLEQ  240
KLIEAWLADK DAEALRCQKL LVEEEEAAQK RQAELLERKR RKKLRQKEQK AKEHRNEEVV  300
RDSFNSMAAE PPSQASAHDN ASDSESQDLD GPSEISLFEM SQNPSVEDVD SEANSGVGFV  360
DNDSNACQNI EPRSHQSLGV PNWHAPPKPR AMSNGFYQMK NSSSSKPEFK SKNGIRDLRV  420
AHTVNNKKVW SRKPKPEKDG ENLKFRVQEA FVQVGQDKEH ELLIGSIAVN LGSSHTREKC  480
DNAHFPEDDG TQEYQPSKKF NNAHEKNSRS DSNHSGASQS TVKHWRRRQE VKDSVPVQRE  540
SEVNSSFLKD DDQTVNNEEC LRSSSLNGHH CEIECHSLPS ESNRPGNLHF SSDAARTFLS  600
QRWKEAIAAD HVKLVLLPEL EPSAAGTQDC TDVSDSDKRS ILRNAEDRMV NGPSASGPAK  660
PELKMKPEKG LKKRYILKQR ANDT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	277	284	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-122	C2H2 family protein