PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM78972.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family HD-ZIP
Protein Properties Length: 327aa    MW: 35504.6 Da    PI: 6.7885
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM78972.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.6e-10175221256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++keq   Lee F+++++++         +l+L  rqV vWFqNrRa+ k
  OWM78972.1 175 RKKLRLSKEQSAFLEESFKEHSTLNP--------QLNLRPRQVEVWFQNRRARTK 221
                 6788899************9999887........7******************98 PP
2HD-ZIP_I/II100.91.1e-32175257192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq+++LEesF+e+++L+p        +L+l+prqv+vWFqnrRARtk+kq+E d+e+Lkr++++l+een+rL+ke +eLr +lk
   OWM78972.1 175 RKKLRLSKEQSAFLEESFKEHSTLNP--------QLNLRPRQVEVWFQNRRARTKLKQTEIDCEYLKRCCETLTEENRRLQKELQELR-ALK 257
                  69*********************999........69***************************************************9.555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MELALSLGDS SKPFTASFID KAPSTSTSKA KDLEFRVGLG INAGEGRGKD VIRGGADSDA  60
VPLQLDLLPF TPVPHSKPLQ QFRFPWLAET LGSAEPDSSA GEHSRGLDVN RFPAFAEETD  120
DGGAHSSPNS AVSSFHMEFG ISSGSGGRGN KRDLEADAER DGSRGSDDDE NGLTRKKLRL  180
SKEQSAFLEE SFKEHSTLNP QLNLRPRQVE VWFQNRRART KLKQTEIDCE YLKRCCETLT  240
EENRRLQKEL QELRALKTSQ PFYMQLPATT LTMCPSCERV ATSSSSAAAA ASASSAAANS  300
ATTLPLLAKP RVYPFPQAQA QAHKAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174180TRKKLRL
2216224RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-86HD-ZIP family protein