PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM78797.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family ARF
Protein Properties Length: 868aa    MW: 96371.4 Da    PI: 6.6403
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM78797.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.65.6e-24128229199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+
  OWM78797.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySQQPPCQ-ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLF 223
                 99*****************************97677775.9************************************************..8889999* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  OWM78797.1 224 LGIRRA 229
                 ***997 PP
2Auxin_resp118.94.1e-39254337183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k
  OWM78797.1 254 AAHAAATNSRFTIFYNPRASPSEFVIPLGKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 337
                 79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    
MRLSSPGLNH QSQEGEKKCL NSELWHACAG PLVSLPSVGT RVVYFPQGHS EQVAASTNKE  60
VDSHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSQQEQKEV YLLPSELGTA  120
NKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QQPPCQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLFLGIRRAS RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LGKYVKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI GDLDPVRWPN SHWRSVKVGW DESTAGEKQP RVSLWEIEPL  360
TTFPMYPSPF PLRLKRPWPT GLPTFPGGMG DQGIQSINFG GTPWMQPRLD PSMAGLHPDL  420
YQVMTTALNE MRGVDPMKIA SQSLLQFQQP LNVVTDPLAA SSFTQRQVPH PSHSQSALLQ  480
NFQENKGPSQ PQLPQQQPQR NPSHNDRQQQ QEPREVNQVH QQVPSMISLP HYTSTAPAQL  540
TSLQQNFSDG IGNTIGASEV SVMQRILGSL SQDGTSPIPS LTGPNHSFSS SPLLQKHIPV  600
EPALPSEATH CTIPQVDHLG VPRSNVSELT SLLPPFPGRE YSVFHGANDP QSSVLFGVNI  660
DSSSLMMQNG IAQLRNVGNE RDTLSVPFAA SNFNNAVGTE FPINSDITTS SCVDETGFLQ  720
SSENVDQANP PPRTFVKVHK SGSFGRSLDI SKFSSYDELR SELARMFGLE GLLEEPQRSG  780
WQLVFVDREN DVLLLGDDPW QEFVNDVWYI KILSPTEVQQ MGKAGIPPVS SATSQRQSKI  840
RKIYDDYVSR QELRNSSDGI ASIGSLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein