PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM78588.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family GRAS
Protein Properties Length: 449aa    MW: 50231 Da    PI: 4.9229
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM78588.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS277.54.2e-85444422373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lLl+cA a++s+d +laq++++ l++ as++gdp+qRl++ f++AL +r +r +++ +    +s+ +++ +s +   l +++++ P+++f++ + N 
  OWM78588.1  44 EKLLLHCASALESNDVTLAQQVMWVLNNVASSSGDPNQRLTSWFLRALISRASRLCPTAVGFNGTSTIPRRLMSVT--DLAVYVDLIPWHRFGFCASNG 140
                 689***************************************************8888887766666664433333..33469**************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl............... 181
                 aI++a+eg ++vHi+Df+i++++QWp+L++aLa+Rpegppsl+iT+ +   ++    + ++ee+g rL +fA+  +v+fef+v+               
  OWM78588.1 141 AIYKAIEGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLKITVPNFRPPVpplLNVSIEEVGFRLGNFAKFRDVRFEFDVIddspcslssenhfne 239
                 *********************************************98876666779999*************************999988876665544 PP

        GRAS 182 .....vakrledl....eleeLrvkp..gEalaVnlvlqlhrlldesvsles........erdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                                  +l++L++++  gEal++n++  l +l de+ + +s        +rd++L+++k+l P +v+vv++++d++++s+  r+++++
  OWM78588.1 240 sprfpF------QslldQLSSLSFDHsnGEALVINCQNWLRYLCDEPNDRQSgrlgeessRRDAFLDIIKELDPCIVTVVDEDSDLSGPSLTSRITSCF 332
                 443333......0334455555555555****************98888777777777779************************************** PP

        GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                 +y +  fd+le+ lp++s++ri +E   +g +i+n++  eg +r+er e+ ++  +r++++GF ++p+ e+++ ++k+ll +++  g+ ++ e++ l+l
  OWM78588.1 333 NYLWIPFDALETFLPKDSSQRIDYESD-IGHKIENILEFEGCQRIERLESGAQLTHRMKNMGFLSAPFCEETVGEVKSLLDEHA-SGWGMKREEDMLIL 429
                 ***************************.********************************************************.889999999***** PP

        GRAS 361 gWkdrpLvsvSaW 373
                 +Wk+++ v+++aW
  OWM78588.1 430 TWKGHNSVFATAW 442
                 ************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    
MRAELTKSTP SLYLRNLNLL NNPQAPLSGA LRGCLGSLDG ACIEKLLLHC ASALESNDVT  60
LAQQVMWVLN NVASSSGDPN QRLTSWFLRA LISRASRLCP TAVGFNGTST IPRRLMSVTD  120
LAVYVDLIPW HRFGFCASNG AIYKAIEGYS KVHILDFSIT HCMQWPTLID ALAKRPEGPP  180
SLKITVPNFR PPVPPLLNVS IEEVGFRLGN FAKFRDVRFE FDVIDDSPCS LSSENHFNES  240
PRFPFQSLLD QLSSLSFDHS NGEALVINCQ NWLRYLCDEP NDRQSGRLGE ESSRRDAFLD  300
IIKELDPCIV TVVDEDSDLS GPSLTSRITS CFNYLWIPFD ALETFLPKDS SQRIDYESDI  360
GHKIENILEF EGCQRIERLE SGAQLTHRMK NMGFLSAPFC EETVGEVKSL LDEHASGWGM  420
KREEDMLILT WKGHNSVFAT AWVPASFDG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-119GRAS family protein