PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM78539.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

SBP

Protein Properties

Length: 814aa MW: 90392.5 Da PI: 5.4789

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM78539.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	113.9	9e-36	147	223	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv gCead+se+k yhrrh+vC +++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k OWM78539.1 147 RCQVLGCEADISELKGYHRRHRVCLRCAHATSVVLDGESKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKP 223 6************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 814 aa Download sequence
MDHAKTSLPP PSPSLHLPSP AMDGHPSIPI DDPNSSVWDF ADLLDFTEDA DIFPDPWDTT 60 VDGSPPATAA PLADPDPDPD PLPPHPPPPA DTGAARTRKR DPRLVCSNFL AGIVPCACPE 120 IDEKLEEEGL PGKKRTRTQR SGSGVARCQV LGCEADISEL KGYHRRHRVC LRCAHATSVV 180 LDGESKRYCQ QCGKFHILSD FDEGKRSCRR KLERHNNRRR RKPVNSDNAV GKDFQQEVNA 240 EDVPCEDEDG KDILGSRSQL GEKEPSLEPE DGQVSPPCSA PELQIVNYTD SVVSVVASRD 300 TQVRGTKENT KQSLSPSYCD NRSTYSSVCP TGRISFKLYD WNPAEFPRRL RLQVFQWLSS 360 MPVELEGYIR PGCTILTMFI AMPKIMWVKL SEDPVSSIRD FVVRHGSVLP ARSTFFVYLN 420 NMIFCVLKGG SSVVKVKVDD RAPKLHYVYP LCFEVGTPVE FVACGSNLLQ SKFRFLISFS 480 GKYLACESSL VSPNYGSGEG NDCKHDRQFY NIHIPHTQPN LFGPAFVEVE NESGLSNFIP 540 VLFGDKEVCS EMRKIQQSVE GSFSTRDSDF PGASSSCESF IPGQTAISEF LVDIGWLLKE 600 PPSENLHSAL SASQIQRLIC VLNFLIENES TVILEKILLI LRKLMEEFEV NSGSGDSCNA 660 EIDALRIRMD YAQDFLFQKL QRIGVPPLCS GFSALKEDSN TQRSSLKNEV PAVQDADQDM 720 EIGENKNQGP LTTLTFTDKA EVVPLLDFEG SERGTLLKRN PSRQIFSPLL LRSRPSLYIV 780 TTAAVCFGVC AVLLHPHKVG EFAVYVHRRL FDAP

Sequence ? help Back to Top

Protein Sequence Length: 814 aa Download sequence

MDHAKTSLPP PSPSLHLPSP AMDGHPSIPI DDPNSSVWDF ADLLDFTEDA DIFPDPWDTT  60
VDGSPPATAA PLADPDPDPD PLPPHPPPPA DTGAARTRKR DPRLVCSNFL AGIVPCACPE  120
IDEKLEEEGL PGKKRTRTQR SGSGVARCQV LGCEADISEL KGYHRRHRVC LRCAHATSVV  180
LDGESKRYCQ QCGKFHILSD FDEGKRSCRR KLERHNNRRR RKPVNSDNAV GKDFQQEVNA  240
EDVPCEDEDG KDILGSRSQL GEKEPSLEPE DGQVSPPCSA PELQIVNYTD SVVSVVASRD  300
TQVRGTKENT KQSLSPSYCD NRSTYSSVCP TGRISFKLYD WNPAEFPRRL RLQVFQWLSS  360
MPVELEGYIR PGCTILTMFI AMPKIMWVKL SEDPVSSIRD FVVRHGSVLP ARSTFFVYLN  420
NMIFCVLKGG SSVVKVKVDD RAPKLHYVYP LCFEVGTPVE FVACGSNLLQ SKFRFLISFS  480
GKYLACESSL VSPNYGSGEG NDCKHDRQFY NIHIPHTQPN LFGPAFVEVE NESGLSNFIP  540
VLFGDKEVCS EMRKIQQSVE GSFSTRDSDF PGASSSCESF IPGQTAISEF LVDIGWLLKE  600
PPSENLHSAL SASQIQRLIC VLNFLIENES TVILEKILLI LRKLMEEFEV NSGSGDSCNA  660
EIDALRIRMD YAQDFLFQKL QRIGVPPLCS GFSALKEDSN TQRSSLKNEV PAVQDADQDM  720
EIGENKNQGP LTTLTFTDKA EVVPLLDFEG SERGTLLKRN PSRQIFSPLL LRSRPSLYIV  780
TTAAVCFGVC AVLLHPHKVG EFAVYVHRRL FDAP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	209	221	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	SBP family protein