PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM78507.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 563aa MW: 61598.1 Da PI: 5.6425

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM78507.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.7	2.7e-18	41	88	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ ++ g+ R++k+c++rw ++l OWM78507.1 41 KGPWTSAEDAILVDYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 88 79******************************************9986 PP
2	Myb_DNA-binding	48.4	2.2e-15	94	137	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g +++eE+ l+v++++++G++ W++ a+ ++ gRt++++k++w++ OWM78507.1 94 KGTFSAEEERLIVELHAKMGNK-WARMAAQLP-GRTDNEIKNYWNT 137 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MSRTKTVESD EGSLSNDQIG SPLVDKGKSG GTSDGGVVLK KGPWTSAEDA ILVDYVKKHG 60 EGNWNAVQKH SGLSRCGKSC RLRWANHLRP NLKKGTFSAE EERLIVELHA KMGNKWARMA 120 AQLPGRTDNE IKNYWNTRIK RRQRAGLPLY PAELCMRASQ EGQQGSRFHG INNGNQGFLQ 180 SGSRQSPDVM FDSLKANQGV LSYVSELADV SGSSLLMKSL GPTQFGSLMP STLHRPKRLR 240 EPVSLYAGFS GNSKDVFSSL HPYEDDNREK LGRSFGYSFP IDLDPTEKDP LPSFDVVQGG 300 HSFSNGNSST SKPTPEALKM ELPSLQYSET DFGSSWDTSP SPPTLLESVD RFIQSPPRSG 360 KIEAECHSPR NNGLLETLVY EAKTLSSAKN QSSDKSSNSS APTPGDICSS SLDVCKTEWD 420 EYGDPISPLG HSATSLFNEH TPMSASGSSL DDQPHADTFP VSNVKKESFN HLQGPEREQE 480 IPIQWDYSRP DALLASSDWF GLQSGPFKEQ APISDSIATL LGDDLTSDYK QTAEAYGSSD 540 QGWGFGSYAW NNMPAVCQMS EFP

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MSRTKTVESD EGSLSNDQIG SPLVDKGKSG GTSDGGVVLK KGPWTSAEDA ILVDYVKKHG  60
EGNWNAVQKH SGLSRCGKSC RLRWANHLRP NLKKGTFSAE EERLIVELHA KMGNKWARMA  120
AQLPGRTDNE IKNYWNTRIK RRQRAGLPLY PAELCMRASQ EGQQGSRFHG INNGNQGFLQ  180
SGSRQSPDVM FDSLKANQGV LSYVSELADV SGSSLLMKSL GPTQFGSLMP STLHRPKRLR  240
EPVSLYAGFS GNSKDVFSSL HPYEDDNREK LGRSFGYSFP IDLDPTEKDP LPSFDVVQGG  300
HSFSNGNSST SKPTPEALKM ELPSLQYSET DFGSSWDTSP SPPTLLESVD RFIQSPPRSG  360
KIEAECHSPR NNGLLETLVY EAKTLSSAKN QSSDKSSNSS APTPGDICSS SLDVCKTEWD  420
EYGDPISPLG HSATSLFNEH TPMSASGSSL DDQPHADTFP VSNVKKESFN HLQGPEREQE  480
IPIQWDYSRP DALLASSDWF GLQSGPFKEQ APISDSIATL LGDDLTSDYK QTAEAYGSSD  540
QGWGFGSYAW NNMPAVCQMS EFP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-122	MYB family protein