PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM78373.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 359aa MW: 39765.4 Da PI: 5.4046

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM78373.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.4	9.1e-15	35	82	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ G g+W+ Ia+ g+ R++k+c++rw +yl OWM78373.1 35 KGLWSPEEDEKLMRYMLTNGQGCWSDIASNAGLQRCGKSCRLRWINYL 82 678*******************************************97 PP
2	Myb_DNA-binding	54.5	2.8e-17	88	132	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E+el+v++++ lG++ W+ Ia++++ gRt++++k++w++ OWM78373.1 88 RGAFSPQEEELIVHLHTILGNR-WSQIAARLP-GRTDNEIKNFWNST 132 89******************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MRKPAAPGDI TNMGKDKVNC SNNSQNKNNN MKLRKGLWSP EEDEKLMRYM LTNGQGCWSD 60 IASNAGLQRC GKSCRLRWIN YLRPDLKRGA FSPQEEELIV HLHTILGNRW SQIAARLPGR 120 TDNEIKNFWN STLKKRLKIN SFTSSPNDSD SSDPRDNVLG GITPAMQEHD TMTACMDSLS 180 PPSSLQSMQN LFMGNQHDPL FHMQGNNCYN CHDVLGGGAG LFYFSPPCIA QGSVFGDDYR 240 YGDFLNSIPG KMEIGLSEFS VAPFGNSSGG SEDISMSNSA ALSCSINSTT DNCNVRSNNG 300 GFFSNDYCFN NTAESLKMEG ISLELIGNDH LRRGPNLRMG EWDLEGLMDD ISSFPLLDF

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MRKPAAPGDI TNMGKDKVNC SNNSQNKNNN MKLRKGLWSP EEDEKLMRYM LTNGQGCWSD  60
IASNAGLQRC GKSCRLRWIN YLRPDLKRGA FSPQEEELIV HLHTILGNRW SQIAARLPGR  120
TDNEIKNFWN STLKKRLKIN SFTSSPNDSD SSDPRDNVLG GITPAMQEHD TMTACMDSLS  180
PPSSLQSMQN LFMGNQHDPL FHMQGNNCYN CHDVLGGGAG LFYFSPPCIA QGSVFGDDYR  240
YGDFLNSIPG KMEIGLSEFS VAPFGNSSGG SEDISMSNSA ALSCSINSTT DNCNVRSNNG  300
GFFSNDYCFN NTAESLKMEG ISLELIGNDH LRRGPNLRMG EWDLEGLMDD ISSFPLLDF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08500.1	1e-68	MYB family protein