PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM78351.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB_related

Protein Properties

Length: 704aa MW: 76702.6 Da PI: 10.1812

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM78351.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.8	1.4e-09	19	69	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqk 46 +W t++++ll++av+++G + W+++a++++ t+ +c++++++ OWM78351.1 19 AWGTWDELLLACAVQRHGFKAWDSVASEVQsrtslplPLTTPHHCQLKYHD 69 6*****************************999999977799999999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence
MTKPPENSGE DEAAATIAAW GTWDELLLAC AVQRHGFKAW DSVASEVQSR TSLPLPLTTP 60 HHCQLKYHDL HRRFSADDDE NDSAVPWLDE LRKVRVAELR QEVQRYDVSI LSLQLKVKKL 120 EEEREESLRE DQQQPDLPEE SKPARSGNDS LAAGGETGAS LPEKTAAKSA AGEESDRENR 180 SVNGSNSTGV KSEREKAGRE AEPKTNKREE EDGEEPVRAG TGSSEKTDQA SEESKPEGMD 240 SYNGSSEPNR ERRGEEEESD ELRDSVAQSK ENSSDVQSSA SLTRRKKRKG RRVNEISCGG 300 EVAETDDGSP AADLAGKKSQ PLVDFLKMIR AHKHSCFFER RLAVQESDKY QNIIRQHTDI 360 DTIQSKLRKG SYSSTPLSFF RDLLLLFDNA LVFYPKSSPE SATALELHRL VSAELHKKIK 420 KPTPRSSSTQ DAPVRPKPEL ERSDSLLAKH KSSVPIIVCR KRSSFSAKPS STAMGQKGEP 480 RSEDKRPASD PKQQQQQPQP NKAGGQEQQN LPKINNTVER SVTGARSLRR SNTNLKSSNA 540 STSTTTTTTK KSPLGSTTDK AETPKTDQKK TEGAAASTKK RSAADFLKRI KRNSPAGKSK 600 NTAGDPKNSQ GGGGGGSGNG DQKKKQSGKG DKGEERASRQ SGGGSSGAKH TKEDSSPSKR 660 SVGRPPKKGG DSNAVAGKRI RDSGGGKEVA VAAALKRPRK RTRR

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence

MTKPPENSGE DEAAATIAAW GTWDELLLAC AVQRHGFKAW DSVASEVQSR TSLPLPLTTP  60
HHCQLKYHDL HRRFSADDDE NDSAVPWLDE LRKVRVAELR QEVQRYDVSI LSLQLKVKKL  120
EEEREESLRE DQQQPDLPEE SKPARSGNDS LAAGGETGAS LPEKTAAKSA AGEESDRENR  180
SVNGSNSTGV KSEREKAGRE AEPKTNKREE EDGEEPVRAG TGSSEKTDQA SEESKPEGMD  240
SYNGSSEPNR ERRGEEEESD ELRDSVAQSK ENSSDVQSSA SLTRRKKRKG RRVNEISCGG  300
EVAETDDGSP AADLAGKKSQ PLVDFLKMIR AHKHSCFFER RLAVQESDKY QNIIRQHTDI  360
DTIQSKLRKG SYSSTPLSFF RDLLLLFDNA LVFYPKSSPE SATALELHRL VSAELHKKIK  420
KPTPRSSSTQ DAPVRPKPEL ERSDSLLAKH KSSVPIIVCR KRSSFSAKPS STAMGQKGEP  480
RSEDKRPASD PKQQQQQPQP NKAGGQEQQN LPKINNTVER SVTGARSLRR SNTNLKSSNA  540
STSTTTTTTK KSPLGSTTDK AETPKTDQKK TEGAAASTKK RSAADFLKRI KRNSPAGKSK  600
NTAGDPKNSQ GGGGGGSGNG DQKKKQSGKG DKGEERASRQ SGGGSSGAKH TKEDSSPSKR  660
SVGRPPKKGG DSNAVAGKRI RDSGGGKEVA VAAALKRPRK RTRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	284	292	RRKKRKGRR
2	696	704	RRKKRKGRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60110.1	6e-46	MYB_related family protein