PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM78341.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 767aa MW: 85156.1 Da PI: 5.403

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM78341.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21	6e-07	124	145	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C ff++ G C Gd+C+F Hg OWM78341.1 124 VPCIFFQK-GLCLKGDKCSFLHG 145 69****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence
MVAGAPDSTQ QHPQASSASV PSAEEEALKR NTDCVYFLAS PLTCKKGSEC EYRHSEYARV 60 NPRDCWYWLN GNCLNPKCAF RHPPLDGLLG AQASASIGAS LPPQQVAVPP STPNSYNNSG 120 RQAVPCIFFQ KGLCLKGDKC SFLHGANSFG NKVQQATPTM LTGDLSTSRK PPGVLQKCFQ 180 EQQVPAQSSK PPVLQSSAKL VLNAEYDTPG NVGSLEKSSV ARSTDEEASQ CKPSHPSSIL 240 NGSLQSRSGR SHHTYAFDER SFQNDKEADE FLRESSPGFD VLVDDELGDP EYYHGEDQFR 300 RTRTRERRIS SSANEYEMDH PADFNSLSDA DREMLHDRHI FESYDQMSGQ FGWDQPRNQS 360 EKIFGGLSHR EGRNHVNSET PEFFGGSDLR HRLSKQRRVN GLRSVVSNDF VPDSHVEERN 420 YRGSSQRDSQ HASSQESSLS DRLRGRVKFP GRSVGDRHED KPDWQMDRER SLGRLHQGRL 480 RDRLKGRLQE ENSSAVGKRS SSPQMRRETW DGTDANFAGP KSLSELKSMG QQIKGQESSS 540 LAVRRQDERA GDQQSDVDLS FEGPKPLSVL LKRKREAKTT AASKCGPSVG TEGSCGWVNG 600 SGLIESRTSP ANAQIQSSLS QSKEDGLNCQ ANKEEGIKLT SIDAVGNMQQ GILGTHGGQS 660 SLQGNVNPSK EREESMVVQD AIHEHELEGD DQQDGEYDYE NVDEGEYNYD GENGDEEYLD 720 DEDGDDFAKK APVDAIHRRL VKPFDVTVET NKKDYEQLCS CSVWQLL

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence

MVAGAPDSTQ QHPQASSASV PSAEEEALKR NTDCVYFLAS PLTCKKGSEC EYRHSEYARV  60
NPRDCWYWLN GNCLNPKCAF RHPPLDGLLG AQASASIGAS LPPQQVAVPP STPNSYNNSG  120
RQAVPCIFFQ KGLCLKGDKC SFLHGANSFG NKVQQATPTM LTGDLSTSRK PPGVLQKCFQ  180
EQQVPAQSSK PPVLQSSAKL VLNAEYDTPG NVGSLEKSSV ARSTDEEASQ CKPSHPSSIL  240
NGSLQSRSGR SHHTYAFDER SFQNDKEADE FLRESSPGFD VLVDDELGDP EYYHGEDQFR  300
RTRTRERRIS SSANEYEMDH PADFNSLSDA DREMLHDRHI FESYDQMSGQ FGWDQPRNQS  360
EKIFGGLSHR EGRNHVNSET PEFFGGSDLR HRLSKQRRVN GLRSVVSNDF VPDSHVEERN  420
YRGSSQRDSQ HASSQESSLS DRLRGRVKFP GRSVGDRHED KPDWQMDRER SLGRLHQGRL  480
RDRLKGRLQE ENSSAVGKRS SSPQMRRETW DGTDANFAGP KSLSELKSMG QQIKGQESSS  540
LAVRRQDERA GDQQSDVDLS FEGPKPLSVL LKRKREAKTT AASKCGPSVG TEGSCGWVNG  600
SGLIESRTSP ANAQIQSSLS QSKEDGLNCQ ANKEEGIKLT SIDAVGNMQQ GILGTHGGQS  660
SLQGNVNPSK EREESMVVQD AIHEHELEGD DQQDGEYDYE NVDEGEYNYD GENGDEEYLD  720
DEDGDDFAKK APVDAIHRRL VKPFDVTVET NKKDYEQLCS CSVWQLL