PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM78153.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family HD-ZIP
Protein Properties Length: 769aa    MW: 85020.2 Da    PI: 6.3956
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM78153.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.53.5e-21114169156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  OWM78153.1 114 RKKYHRHTAEQIREMESLFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQLK 169
                 7999************************************************9877 PP
2START224.82.7e-702855084206
                 HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ++a+ el+++a+a+ep+Wv+s+    e++n+de++++f +++         +s+ea+r++gvv+ +l++l+++++d + qW+e+++    ka+t++vi+
  OWM78153.1 285 NQATGELQRMATAREPLWVRSVetgrEILNYDEYVKEFLPEGLtssdgrpkRSIEASRETGVVFVDLPRLLQSFMDMN-QWKEMFPcmisKAATVDVIN 382
                 678889**********************************8889**********************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 +g      ga+qlm++elq+l+p+vp R+++f+R+++ql+ ++w+ivdvS+d  +++  ++s+v+++++pSg++ie+k ngh+kv+wveh +++++++h
  OWM78153.1 383 NGegpnrnGAVQLMFTELQMLTPMVPtREVYFIRFCKQLSPEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKTNGHCKVIWVEHLECQKSTVH 480
                 ********************************************************98.9*************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                  ++r +v+sgla+ga++w+atlq+qce+
  OWM78153.1 481 PMYRTIVNSGLAFGARHWMATLQQQCER 508
                 **************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    
MGVVDMSNNN PPSSRTKDFF ASPALSLSLA GIFRDAGAAA ASRAESGGGG GTEVEEGDEG  60
SGGGGGARGL GLREETVEIS SENSGPARSR SDDEFDPDGD PDDDNDGDKK KKKRKKYHRH  120
TAEQIREMES LFKESPHPDE KQRQQLSKQL GLAPRQVKFW FQNRRTQLKA IQERHENSLL  180
KTEMEKLRDE NKAMRETIQK SCCPNCGSAT TSRETALTTQ EQQLRIENAR LKAEVEKLRA  240
ALGKYPPGTS SPSCSAGADQ ETRSSLDFYT GIFGLDKSRI MELVNQATGE LQRMATAREP  300
LWVRSVETGR EILNYDEYVK EFLPEGLTSS DGRPKRSIEA SRETGVVFVD LPRLLQSFMD  360
MNQWKEMFPC MISKAATVDV INNGEGPNRN GAVQLMFTEL QMLTPMVPTR EVYFIRFCKQ  420
LSPEQWAIVD VSIDKVEDNI DASLVKCRKR PSGCIIEDKT NGHCKVIWVE HLECQKSTVH  480
PMYRTIVNSG LAFGARHWMA TLQQQCERLV FFMATNVPTK DSSGVATLAG RKSILRLAQR  540
MSQSFCHAIG ASSFHSWTKV PGKMGEDIRV ASRKNLNDPG EPVGVILCAV SSVLLPVSPH  600
VLFDFLRDEA RRHEWDIMLS AGPVQSIANL AKGQDRGNSV NIQTMKSKDN SMWLLQDTCT  660
NAYESMVVYA PVDITGMQAV MTGCDSSNIA VLPSGFSILP DGLESRPLVI TSRQEEKSSE  720
CGSLLTIAFQ ILTNTSPTAK LTMESVESVN TLISCTLRNI RTSLQCEDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109115KKKKKRK
2110116KKKKKRK
3110115KKKKRK
4112116KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein