PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM78111.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family HD-ZIP
Protein Properties Length: 845aa    MW: 92943.2 Da    PI: 6.4626
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM78111.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.5e-192381357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OWM78111.1 23 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 81
                5679*****************************************************97 PP
2START176.12.1e-551673752205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d + W ++++++++l+v+ ++  g+++l +++l
  OWM78111.1 167 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPT-RVAEILKDWPSWFRDCRAVDVLNVLPTAngGTIELLYMQL 264
                 7899******************************************************.9999999999****************9999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+ +Ry+  l++g++v++ +S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s + +v+h+dl+ ++++++lr+l++s+++ ++
  OWM78111.1 265 YAPTTLAPaRDFWLLRYTSVLEDGSLVVCQRSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIRIVDHMDLEPWSVPEVLRPLYESSTMLAQ 363
                 ***************************************9988899***************************************************** PP

                 HHHHHHTXXXXX CS
       START 194 ktwvatlqrqce 205
                 kt++a+l+++++
  OWM78111.1 364 KTTMAALRQLRQ 375
                 ********9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    
MAMSCKEGKL GHSNSSNSMD NGKYVRYTPE QVEALERLYH ECPKPSSLRR QQLIRECPIL  60
SNIEPKQIKV WFQNRRCREK QRKEASRLQA VNRKLTAMNK LLMEENDRLQ KQVSQLVYEN  120
GYFRQHTQNS TLATKDTSCE SVVTSGQHQL TSQHPPRDAS PAGLLSIAEE TLAEFLSKAT  180
GTAVEWVQMP GMKPGPDSIG IVAISHGCPG VAARACGLVG LEPTRVAEIL KDWPSWFRDC  240
RAVDVLNVLP TANGGTIELL YMQLYAPTTL APARDFWLLR YTSVLEDGSL VVCQRSLKNT  300
QNGPSMPPVQ HFVRAEMLPS GYLIRPCEGG GSIIRIVDHM DLEPWSVPEV LRPLYESSTM  360
LAQKTTMAAL RQLRQIAQEV SQSNVSSGWG RRPAALRALS QRLSRGFNEA LNGFNDEGWS  420
VMGNDGIDDV TILVNSSPEK LMGLNLTFTN GFSAVSSAVL CARASMLLQN VPPAVLLRFL  480
REHRSEWADN SIDAYSAAAV KAGPCSLPGS RVGSFGGQVI LPLANTIEHE EFLEVIKLEG  540
IGHCPEDSMM PRDIFFLQLC SGVDENAVGT CAELIFAPID ASFADDAPLL PSGFRIIPLD  600
SGKEASSPNR TLDLASSLEI GSAGNRTSND LSAASGCTRS VMTIAFEFAF ESHMQEHVAS  660
MARQYVRSII SSVQRVALAL SPSNLSSHAG LRTPLGTPEA QTLARWICHS YRCYLGVELL  720
KLNNEGGEST LKSLWHHSDA IMCCSLKALP VFTFANQAGL DMLETTLVAL QDITLEKIFD  780
DHGRKTLCSE FPQIMQQGFA CLQGGICLSS MGRPVSYERA VAWKVMNEEE NAHCICFMFV  840
NWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein