PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM77662.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family HD-ZIP
Protein Properties Length: 732aa    MW: 80429 Da    PI: 5.7962
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM77662.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665.1e-2159114156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  OWM77662.1  59 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 114
                 688999***********************************************998 PP
2START203.77.3e-642504691206
                 HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
       START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                 ela +a++el++ a+a+ep+W       e +n+de+l++f+++ +      ++ea+r+s+vv+m++  lve+l+d++ qW++ +     +a+t++v+s+
  OWM77662.1 250 ELAVAAMEELIRIAQAGEPLWIPGDhytEVLNEDEYLRTFPRGIGpkpleLRSEASRDSAVVIMNHISLVETLMDVN-QWSRVFCgivsRAMTIQVLST 347
                 57899****************987778899************999********************************.******99999********** PP

                 T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
       START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                 g      galq+m+ae+q++splvp R+ +fvRy++q+ +g w++vdvS+ds  +      v R++++pSg+li++++ng+skv+wvehv++++r +h+
  OWM77662.1 348 GvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHADGMWAVVDVSLDSLHPGA----VPRSRRRPSGCLIQELPNGYSKVIWVEHVEVDDRAVHN 442
                 ******************************************************997....79************************************ PP

                 HHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 180 llrslvksglaegaktwvatlqrqcek 206
                 ++r+lv s++a+gak+wv+tl+rqce+
  OWM77662.1 443 IYRQLVDSTIAFGAKRWVSTLDRQCER 469
                 *************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    
MFQPSMFDNH HHLLDMIAKP PSEGEMGSLR DDDFENKSGT ENMEFPSGED PDPNQRPKKK  60
RYHRHTQHQI QELEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKAQHERQ  120
ENSVLKAENE KLQVENSRYR EALANATCPN CGGPAALGEM SFDEQHLRIE NARLREEIDR  180
ISGIAAKYVG KPLTSYSQLS PHMAGPGHSF DHGIGSFGPQ SGLVGEMYGG GDLLRSISLP  240
TEANKPMIVE LAVAAMEELI RIAQAGEPLW IPGDHYTEVL NEDEYLRTFP RGIGPKPLEL  300
RSEASRDSAV VIMNHISLVE TLMDVNQWSR VFCGIVSRAM TIQVLSTGVA GNYNGALQVM  360
TAEFQVPSPL VPTRENYFVR YCKQHADGMW AVVDVSLDSL HPGAVPRSRR RPSGCLIQEL  420
PNGYSKVIWV EHVEVDDRAV HNIYRQLVDS TIAFGAKRWV STLDRQCERL ASSMANNIPA  480
GDLCVITTPE GRKSMLKLAE RMVMSFSSGV GASMAHVWTT LSATGSDDVR VMTRKSADDP  540
GRPPGIVLSA ATSFWLPVPP KRVFDFLRDE NSRSEWDILS NGGEVQEMAH IANGRDPGNC  600
VSLLRVNSPN SSQSNMLILQ ESCTDSTGSY VIYAPVDIVS MNVVLSGGDP DYVALLPSGF  660
AILPDGPSLS NGGSGGILEV GSGGSLLTVA FQILVDSAPN AKLSLGSVAT VNSLIKCTVE  720
RIKAAVTCDH NP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein