PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM77524.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 215aa MW: 24196.2 Da PI: 5.8085 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.6 | 3.7e-19 | 17 | 65 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 kri+++ r +tfskRr gi KKA+EL ++C++ev +++fs+tgk y + OWM77524.1 17 KRIDDDDDRMITFSKRRSGIYKKASELVTMCGTEVGIVVFSPTGKPYSF 65 79*******************************************8887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence |
MASSSKQTRG KQKIEMKRID DDDDRMITFS KRRSGIYKKA SELVTMCGTE VGIVVFSPTG 60 KPYSFGHPSV QAVLNKFLNR NVPPPADDRL QPLIDANIRM RRERYNDFFN QLLARLDNAK 120 ERGKDLSRIT HATSEGNSSN WERGWWEKPL QELSFDELKE EALFLEALHR DICNYLNYPS 180 DLNALGVVDP ALDPRAVNDP PTGVEGGAGP SGEDV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 104 | RMRRER |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-34 | M-type_MADS family protein |