PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM77067.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family ARF
Protein Properties Length: 556aa    MW: 61844.1 Da    PI: 8.2237
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM77067.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.21.8e-2445146199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d+++ +W++++iy+++++r++lt+GW+ Fv+ ++L +gD v+F   + +++el+
  OWM77067.1  45 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELIAKDLHSLEWKFRHIYWGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGEDGELR 140
                 99****************************963.3445679************************************************..449999** PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  OWM77067.1 141 LGIRRA 146
                 ***996 PP
2Auxin_resp691.5e-23174233463
  Auxin_resp   4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtv 63 
                 a+s + vF+v+Y Pr++ts F+++++k+ k+l++++++GmRfkm+fe+ed+se+rl Gt+
  OWM77067.1 174 ALSVGGVFNVYYDPRSTTSHFIIPYRKFFKSLDCSFTPGMRFKMRFEGEDASEQRLGGTI 233
                 6778889***************************************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    
MLMFVTVFSN LILQNEQKLR ERDLEAEAEE DETEPAGKST TPHMFCKTLT ASDTSTHGGF  60
SVPRRAAEDC FPPLDYSQQR PSQELIAKDL HSLEWKFRHI YWGQPRRHLL TTGWSAFVNK  120
KKLVSGDAVL FLRGEDGELR LGIRRAAQVK GSATHPSLRI QHLNQSALME IPKALSVGGV  180
FNVYYDPRST TSHFIIPYRK FFKSLDCSFT PGMRFKMRFE GEDASEQRLG GTIWMPFNAT  240
GFVHGKLSHA VQYLLQMALS CLALSGPDGF GAPDFGESYR FQKVLQGQEN SGFDAAACNG  300
MESQNRPLSE LRRNLLGSNG SQAIGTAYNC IGFGESFRFH KVLQGQETFP RQSYGKSIYD  360
NEVRADRRFG SFDTVQAVSS WNVWSGSSFM IGPNSHVGPQ AIPAQASSLS SVLTFPNAMT  420
NFKMLPCLHE VSKGLRVGNE GLKGDSLLWD RKLGIPDDCN HSRPLPPSHH KGNQDVAPFK  480
RGCRLFGFSL IEGEKFSEKE ADLGLPPLNP DASICSQLST KEFVTSILYL LVGPRCFDDQ  540
GGLQRTLQRN ALILHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.15e-99ARF family protein