PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM76583.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 487aa MW: 52463.8 Da PI: 9.0427

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM76583.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H OWM76583.1 88 FICEICNKGFQRDQNLQLHRRGH 110 89*******************88 PP
2	zf-C2H2	12.6	0.00043	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + OWM76583.1 164 WKCEKCSKRYAVQSDWKAHSKIC 186 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MSNLTSASNT EASVSSCGNR TIETTGGGVG GRSSSMYPLE HQYSSFHPPP AQTSQPPLKK 60 KRNLPGNPDP EAEVIALSPK TLMATNRFIC EICNKGFQRD QNLQLHRRGH NLPWKLKQRS 120 NKEVRKKVYV CPEPSCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KRYAVQSDWK 180 AHSKICGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESS RSIAPNISSN DPRQFLHHGI 240 VQPSPSSTSN PNQHSGFFSN LQIPLQFDPF LANLKKEHEP IQQPFPGLRH DLMMPPWIGS 300 GQDNPFSHQP VFAEGTNPSQ GPGHAGGVGP AMQSFQQAPP LPPAGPTAGS MSATALLQKA 360 AQMGHVYSDP GKSASAVFGL ALSSSNAEAA SGLHAPPHQA GGPSLSLMQE MVSSTQLPGT 420 SYDFPPASGG SGGGGRVGAG GSEGLTRDFL GLRPLSQSEI FDIAGLGNCM SSPHDPQSQH 480 FQKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MSNLTSASNT EASVSSCGNR TIETTGGGVG GRSSSMYPLE HQYSSFHPPP AQTSQPPLKK  60
KRNLPGNPDP EAEVIALSPK TLMATNRFIC EICNKGFQRD QNLQLHRRGH NLPWKLKQRS  120
NKEVRKKVYV CPEPSCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KRYAVQSDWK  180
AHSKICGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESS RSIAPNISSN DPRQFLHHGI  240
VQPSPSSTSN PNQHSGFFSN LQIPLQFDPF LANLKKEHEP IQQPFPGLRH DLMMPPWIGS  300
GQDNPFSHQP VFAEGTNPSQ GPGHAGGVGP AMQSFQQAPP LPPAGPTAGS MSATALLQKA  360
AQMGHVYSDP GKSASAVFGL ALSSSNAEAA SGLHAPPHQA GGPSLSLMQE MVSSTQLPGT  420
SYDFPPASGG SGGGGRVGAG GSEGLTRDFL GLRPLSQSEI FDIAGLGNCM SSPHDPQSQH  480
FQKPWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	127	KLKQRSNKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-116	C2H2 family protein