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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OWM75988.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 266aa MW: 30385.6 Da PI: 4.5782 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 58.7 | 9.7e-19 | 31 | 84 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++++q++ Le+ F ++++ e++++LAk+lgL+ rqV +WFqNrRa+ k
OWM75988.1 31 KKRRLSAHQVQFLERSFDVENKLEPERKAQLAKELGLQPRQVAIWFQNRRARFK 84
56689***********************************************98 PP
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| 2 | HD-ZIP_I/II | 123.6 | 9e-40 | 31 | 120 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
kkrrls++qv++LE+sF+ e+kLeperK++la+eLglqprqva+WFqnrRAR+k+kqlEk+y Lk++yd+lk+e + L ke e+L+ee+
OWM75988.1 31 KKRRLSAHQVQFLERSFDVENKLEPERKAQLAKELGLQPRQVAIWFQNRRARFKSKQLEKEYGELKDSYDKLKAECDCLLKEEEQLKEEV 120
9**************************************************************************************997 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 266 aa Download sequence |
MVNFEKVVPR DGQNGDEEDY EGYGFLQPNA KKRRLSAHQV QFLERSFDVE NKLEPERKAQ 60 LAKELGLQPR QVAIWFQNRR ARFKSKQLEK EYGELKDSYD KLKAECDCLL KEEEQLKEEV 120 LSLKEKLLIK EKGKENQNSS DPLEPVSSGN ISEDQKPNIA ITKDLPDQKP TWGCKPEEAT 180 TSASRSSGVL DSDSPYFTDS NHQALLLEPA NSSHAFEPDC SDFSQEEGDN LDFPRLDHGV 240 YRAPPTSTCG FGFTAELDQQ FWSWPY |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 79 | 87 | RRARFKSKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G65310.2 | 5e-32 | HD-ZIP family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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